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Started by upstream project "BIOFORMATS-test-repo" build number 229 originally caused by: Started by upstream project "Trigger" build number 254 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins2057777938899378117.sh + '[' nd2 = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35929_merge_ci -v /uod/idr/repos/curated/nd2:/data -v /uod/idr-scratch/merge-ci/curated/nd2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:45:56,989 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:45:56,990 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:45:56,990 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:45:56,991 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:45:56,991 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:45:56,992 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:45:56,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:45:56,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:45:56,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:45:56,993 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:45:56,993 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:45:56,993 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:45:57,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:45:57,166 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:45:57,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:45:57,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:45:57,193 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:45:57,193 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:45:57,193 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:45:57,193 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:45:57,193 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:45:57,194 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:45:57,194 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-20 01:45:57,203] [main] java.version = 17.0.2 [testng] 01:45:57,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:45:57,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:45:57,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-20_01-45-57.log] [testng] 01:45:57,251 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-20 01:45:57,252] [main] testng.directory = /data [testng] [2024-10-20 01:45:57,253] [main] testng.configDirectory = /config [testng] [2024-10-20 01:45:57,261] [main] testng.multiplier = 1.0 [testng] [2024-10-20 01:45:57,262] [main] testng.in-memory = false [testng] [2024-10-20 01:45:57,262] [main] testng.allow-missing = false [testng] [2024-10-20 01:45:57,262] [main] user.language = en [testng] [2024-10-20 01:45:57,262] [main] user.country = ${user.country} [testng] [2024-10-20 01:45:57,262] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-20 01:47:11,320] [main] ---------------------------------------- [testng] [2024-10-20 01:47:11,321] [main] Total files: 275 [testng] [2024-10-20 01:47:11,321] [main] Scan time: 74.058 s (269 ms/file) [testng] [2024-10-20 01:47:11,321] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 247 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-20 01:57:33,807] [pool-1-thread-1] Initializing /data/michael/MCammer Nikon file opens in wrong order.nd2: [testng] 01:57:33,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:57:33,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:33,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-20_01-57-33.log] [testng] 01:57:33,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77cd383d - End of configuration. [testng] [2024-10-20 01:57:34,863] [pool-1-thread-12] Initializing /data/michael/metadata only reported for last channel.nd2: [testng] 01:57:34,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:57:34,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:34,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-20_01-57-34.log] [testng] 01:57:34,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d01942a - End of configuration. [testng] [2024-10-20 01:57:35,581] [pool-1-thread-11] Initializing /data/qa-29438/chip1_channel1_each-pixel.nd2: [testng] 01:57:35,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:57:35,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:35,582 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-20_01-57-35.log] [testng] 01:57:35,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28ff49fa - End of configuration. [testng] [2024-10-20 01:57:36,133] [pool-1-thread-10] Initializing /data/venu/eight_160807_control cells_4D.tif: [testng] 01:57:36,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:57:36,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:36,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-20_01-57-36.log] [testng] 01:57:36,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61449c42 - End of configuration. [testng] [2024-10-20 01:57:37,059] [pool-1-thread-9] Initializing /data/michael/Opens ok with LOCI.nd2: [testng] 01:57:37,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:57:37,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:37,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-20_01-57-37.log] [testng] 01:57:37,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73d948c2 - End of configuration. [testng] [2024-10-20 01:57:37,643] [pool-1-thread-8] Initializing /data/qa-4196/120123 10h timelapse after incubator set up 1xy 1t.nd2: [testng] 01:57:37,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:57:37,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:37,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-20_01-57-37.log] [testng] 01:57:37,645 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72582e53 - End of configuration. [testng] [2024-10-20 01:57:38,225] [pool-1-thread-7] Initializing /data/qa-7799/Patient 67 from 20130812.nd2: [testng] 01:57:38,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:57:38,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:38,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-20_01-57-38.log] [testng] 01:57:38,227 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51c22929 - End of configuration. [testng] [2024-10-20 01:57:38,800] [pool-1-thread-6] Initializing /data/strand/Serie040.nd2: [testng] 01:57:38,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:57:38,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:38,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-20_01-57-38.log] [testng] 01:57:38,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eb36878 - End of configuration. [testng] [2024-10-20 01:57:39,453] [pool-1-thread-5] Initializing /data/qa-17099/upSIAPdownNT002.nd2: [testng] 01:57:39,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:57:39,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:39,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-20_01-57-39.log] [testng] 01:57:39,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40f80dcd - End of configuration. [testng] [2024-10-20 01:57:40,242] [pool-1-thread-4] Initializing /data/public/aryeh/multipoint.nd2: [testng] 01:57:40,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:57:40,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:40,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-20_01-57-40.log] [testng] 01:57:40,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4232376f - End of configuration. [testng] [2024-10-20 01:57:41,390] [pool-1-thread-3] Initializing /data/gaurav/A1.nd2: [testng] 01:57:41,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:57:41,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:41,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-20_01-57-41.log] [testng] 01:57:41,391 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71d759e4 - End of configuration. [testng] [2024-10-20 01:57:42,341] [pool-1-thread-2] Initializing /data/qa-7906/2591A1.jp2: [testng] 01:57:42,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:57:42,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:57:42,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-20_01-57-42.log] [testng] 01:57:42,342 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38503342 - End of configuration. [testng] [2024-10-20 01:57:48,400] [pool-1-thread-11] Initializing /data/colin/20110729_beads_001.nd2: [testng] [2024-10-20 01:57:49,232] [pool-1-thread-6] Initializing /data/qa-7983/control_test_200314001.nd2: [testng] [2024-10-20 01:57:49,840] [pool-1-thread-12] Initializing /data/venu/nd-three_channel-6.nd2: [testng] [2024-10-20 01:57:50,484] [pool-1-thread-5] Initializing /data/public/aryeh/por003.nd2: [testng] [2024-10-20 01:57:50,984] [pool-1-thread-9] Initializing /data/qa-27812/Deconvolved_32Float.nd2: [testng] [2024-10-20 01:57:51,578] [pool-1-thread-8] Initializing /data/colin/20110729_beads_001_xy1.nd2: [testng] [2024-10-20 01:57:52,232] [pool-1-thread-3] Initializing /data/kevin/100nm_coat_1.nd2: [testng] [2024-10-20 01:57:53,321] [pool-1-thread-10] Initializing /data/michael/opens_ok.nd2: [testng] [2024-10-20 01:57:58,463] [pool-1-thread-9] Initializing /data/brian/MDCK002.nd2: [testng] [2024-10-20 01:57:59,656] [pool-1-thread-8] Initializing /data/marek/NIS4_fails_to_open_correctly.nd2: [testng] [2024-10-20 01:58:00,250] [pool-1-thread-6] Initializing /data/david/NDSequence013.nd2: [testng] [2024-10-20 01:58:00,809] [pool-1-thread-12] Initializing /data/public/jonas/header_test2.nd2: [testng] [2024-10-20 01:58:01,372] [pool-1-thread-5] Initializing /data/stefanie/nd026_xy1.nd2: [testng] [2024-10-20 01:58:01,976] [pool-1-thread-11] Initializing /data/pete/psf_bead_theoretical.nd2: [testng] [2024-10-20 01:58:03,130] [pool-1-thread-1] Initializing /data/jcb/201101064/Fig 8B imp beta-BPM MaxIP.nd2: [testng] [2024-10-20 01:58:04,865] [pool-1-thread-3] Initializing /data/michael/TEMPmcammer.nd2: [testng] [2024-10-20 01:58:07,560] [pool-1-thread-9] Initializing /data/qa-7454/Dapi PFA Eukitt 1r 001.nd2: [testng] [2024-10-20 01:58:08,628] [pool-1-thread-11] Initializing /data/venu/two_160807_control cells_4D.tif: [testng] [2024-10-20 01:58:09,728] [pool-1-thread-10] Initializing /data/public/aryeh/but3_cont2002.nd2: [testng] [2024-10-20 01:58:10,259] [pool-1-thread-12] Initializing /data/public/jonas/qa-7534/130606_JCC719_003.nd2: [testng] [2024-10-20 01:58:11,066] [pool-1-thread-8] Initializing /data/sara/Ex9 ALADIN WT KO KI 31_07_2013.nd2: [testng] [2024-10-20 01:58:12,285] [pool-1-thread-6] Initializing /data/colin/20110729_beads_001_xy2.nd2: [testng] [2024-10-20 01:58:14,143] [pool-1-thread-5] Initializing /data/jason/CapturedBF2.nd2: [testng] [2024-10-20 01:58:14,741] [pool-1-thread-2] Initializing /data/stephen/LOCI_screen_dump.jpg: [testng] [2024-10-20 01:58:17,285] [pool-1-thread-2] Initializing /data/karsten/100720104_TestglasSchott_MM63_C16h_SYTO.nd2: [testng] [2024-10-20 01:58:17,849] [pool-1-thread-1] Initializing /data/dan/120109_test.nd2: [testng] [2024-10-20 01:58:18,877] [pool-1-thread-5] Initializing /data/tom/512x512x11 1um step.nd2: [testng] [2024-10-20 01:58:19,772] [pool-1-thread-3] Initializing /data/jennet/2D001_crop.nd2: [testng] [2024-10-20 01:58:20,412] [pool-1-thread-6] Initializing /data/michael/mcammer BUT THIS FILE OPENS FINE.nd2: [testng] [2024-10-20 01:58:21,863] [pool-1-thread-4] Initializing /data/dan-dickinson/141_mChCtrl_002.nd2: [testng] [2024-10-20 01:58:22,424] [pool-1-thread-11] Initializing /data/qa-29043/Actin-Polymerization-10min-2s.nd2: [testng] [2024-10-20 01:58:22,900] [pool-1-thread-12] Initializing /data/chris/228 and 340.nd2: [testng] [2024-10-20 01:58:23,601] [pool-1-thread-9] Initializing /data/matt/Final merge.nd2: [testng] [2024-10-20 01:58:24,185] [pool-1-thread-1] Initializing /data/venu/nd-two_channel-2.nd2: [testng] [2024-10-20 01:58:25,421] [pool-1-thread-5] Initializing /data/josh/072007h.nd2: [testng] [2024-10-20 01:58:27,336] [pool-1-thread-3] Initializing /data/leon/WellA1_Seq0000.nd2: [testng] [2024-10-20 01:58:28,307] [pool-1-thread-4] Initializing /data/public/aryeh/b16_pdtB+y50__crop.nd2: [testng] [2024-10-20 01:58:30,366] [pool-1-thread-11] Initializing /data/imagesc-76438/Slide2-20-1_Region0000_ChannelBrightfield_Seq0002.nd2: [testng] [2024-10-20 01:58:33,300] [pool-1-thread-6] Initializing /data/imagesc-76438/Slide2-20-1_Region0001_ChannelBrightfield_Seq0003.nd2: [testng] [2024-10-20 01:58:36,923] [pool-1-thread-5] Initializing /data/kevin/test3.nd2: [testng] [2024-10-20 01:58:38,033] [pool-1-thread-9] Initializing /data/public/aryeh/rfp_h2a_cells_02.nd2: [testng] [2024-10-20 01:58:45,649] [pool-1-thread-12] Initializing /data/fiji-655/01.nd2: [testng] [2024-10-20 01:58:46,250] [pool-1-thread-7] Initializing /data/public/jonas/header_test1.nd2: [testng] [2024-10-20 01:58:46,937] [pool-1-thread-1] Initializing /data/michael/MCammer Nikon file that wont open.nd2: [testng] [2024-10-20 01:58:50,268] [pool-1-thread-5] Initializing /data/public/jonas/divisionByZero/290110.tranMgc005cr.nd2: [testng] [2024-10-20 01:58:53,714] [pool-1-thread-1] Initializing /data/unknown_fiji_upload/Day_2_A4_10x_Fluor_Z_Stack.nd2: [testng] [2024-10-20 01:58:54,233] [pool-1-thread-7] Initializing /data/yanmei/snapcells-vps2.nd2: [testng] [2024-10-20 01:58:55,120] [pool-1-thread-12] Initializing /data/qa-28060/20191023-htirf-888.nd2: [testng] [2024-10-20 01:58:55,555] [pool-1-thread-3] Initializing /data/christian/CW002_3_rfp.nd2: [testng] [2024-10-20 01:58:56,017] [pool-1-thread-10] Initializing /data/katherina/120312_488HP_Convallaria nueva.nd2: [testng] [2024-10-20 01:58:59,478] [pool-1-thread-1] Initializing /data/qa-4958/556_t2.nd2: [testng] [2024-10-20 01:58:59,944] [pool-1-thread-10] Initializing /data/hallie/RNAi Plate 4.nd2: [testng] [2024-10-20 01:59:00,456] [pool-1-thread-7] Initializing /data/qa-11064/t2_mp8_z4_ch3_.nd2: [testng] [2024-10-20 01:59:01,222] [pool-1-thread-3] Initializing /data/public/aryeh/4_2_1_cont_NoMR001.nd2: [testng] [2024-10-20 01:59:04,514] [pool-1-thread-12] Initializing /data/qa-7906/2591B1.jp2: [testng] [2024-10-20 01:59:05,009] [pool-1-thread-8] Initializing 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[pool-1-thread-3] Initializing /data/venu/nd-two_channel-0.nd2: [testng] [2024-10-20 02:01:33,344] [pool-1-thread-7] Initializing /data/venu/nd-three_channel-3.nd2: [testng] [2024-10-20 02:01:34,682] [pool-1-thread-11] Initializing /data/yarden/Session26_Well1_10x.nd2: [testng] [2024-10-20 02:01:39,262] [pool-1-thread-9] Initializing /data/public/aryeh/old_cells_02.nd2: [testng] [2024-10-20 02:01:41,249] [pool-1-thread-1] Initializing /data/richard/KitWv#67.avi: [testng] [2024-10-20 02:01:42,658] [pool-1-thread-8] Initializing /data/stefanie/nd026_xy3.nd2: [testng] [2024-10-20 02:01:45,479] [pool-1-thread-4] Initializing /data/qa-29035/Seq0000.nd2: [testng] [2024-10-20 02:01:46,401] [pool-1-thread-3] Initializing /data/kevin/DD100liposomes_1.nd2: [testng] [2024-10-20 02:01:47,333] [pool-1-thread-6] Initializing /data/michael/opened skewed - C=0.tif: [testng] [2024-10-20 02:01:50,050] [pool-1-thread-2] Initializing /data/kyle-vrtis/180627 1e Cas9 GINS collapse lag lag.nd2: [testng] [2024-10-20 02:01:51,166] [pool-1-thread-7] Initializing /data/michael/frap0041 00X 1Xeyepiece 15sec Cy5 ICAM TIRF.nd2: [testng] [2024-10-20 02:01:54,490] [pool-1-thread-9] Initializing /data/public/aryeh/qa-9507/control003.nd2: [testng] [2024-10-20 02:01:58,062] [pool-1-thread-3] Initializing /data/rehan/P128 wt pg bouton.ics: [testng] [2024-10-20 02:01:59,316] [pool-1-thread-8] Initializing /data/josh/CGE1.nd2: [testng] [2024-10-20 02:02:02,571] [pool-1-thread-4] Initializing /data/christian/missing-dimensions-test.nd2: [testng] [2024-10-20 02:02:04,164] [pool-1-thread-7] Initializing /data/public/jonas/512c/nikonTest_1.nd2: [testng] [2024-10-20 02:02:06,151] [pool-1-thread-6] Initializing /data/public/jonas/512c/wtf_alignment.nd2: [testng] [2024-10-20 02:02:07,002] [pool-1-thread-8] Initializing /data/venu/nd-three_channel-2.nd2: [testng] [2024-10-20 02:02:10,821] [pool-1-thread-4] Initializing /data/ye-chen/LOCI_YeChen_Swinburne.nd2: [testng] [2024-10-20 02:02:12,824] [pool-1-thread-2] Initializing /data/kyle/F301.nd2: [testng] [2024-10-20 02:02:14,877] [pool-1-thread-3] Initializing /data/tiao/WellC03_Seq0000.nd2: [testng] [2024-10-20 02:02:15,715] [pool-1-thread-7] Initializing /data/michael/50um_004 skewed.nd2: [testng] [2024-10-20 02:02:17,982] [pool-1-thread-6] Initializing /data/qa-7908/020514 SH003.nd2: [testng] [2024-10-20 02:02:19,129] [pool-1-thread-8] Initializing /data/venu/five_160807_control cells_4D.tif: [testng] [2024-10-20 02:02:21,935] [pool-1-thread-4] Initializing /data/henry/large image.nd2: [testng] [2024-10-20 02:02:23,327] [pool-1-thread-1] Initializing /data/qa-11064/t1_mp8_z4_chOff_005.nd2: [testng] [2024-10-20 02:02:27,614] [pool-1-thread-3] Initializing /data/nadya/flat.nd2: [testng] [2024-10-20 02:02:29,106] [pool-1-thread-7] Initializing /data/public/jonas/JJ1473_control_24h/JJ1473_conrol_24h_02.nd2: [testng] [2024-10-20 02:02:30,090] [pool-1-thread-6] Initializing /data/bernhard/962_xy1.nd2: [testng] [2024-10-20 02:02:30,991] [pool-1-thread-9] Initializing /data/plaissue/2channel-Zstack-withBinaryLayer.nd2: [testng] [2024-10-20 02:02:31,924] [pool-1-thread-8] Initializing /data/public/jonas/2112-2265.nd2: [testng] [2024-10-20 02:02:33,395] [pool-1-thread-4] Initializing /data/michael/test_MCammer.nd2: [testng] [2024-10-20 02:02:34,494] [pool-1-thread-2] Initializing /data/venu/N202-11 20x20.nd2: [testng] [2024-10-20 02:02:35,535] [pool-1-thread-1] Initializing /data/david/NDSequence012.nd2: [testng] [2024-10-20 02:02:37,038] [pool-1-thread-3] Initializing /data/gh-3565/example_metadata001.nd2: [testng] [2024-10-20 02:02:39,847] [pool-1-thread-7] Initializing /data/venu/nd-two_channel-3.nd2: [testng] [2024-10-20 02:02:40,645] [pool-1-thread-6] Initializing /data/stefanie/nd026_xy0.nd2: [testng] [2024-10-20 02:02:41,547] [pool-1-thread-9] Initializing /data/john/M900117_CBP11555_C264M2_SOL_CD31_s1.nd2: [testng] [2024-10-20 02:02:42,819] [pool-1-thread-4] Initializing /data/venu/N202.1A+7 2h.nd2: [testng] [2024-10-20 02:02:45,123] [pool-1-thread-1] Initializing /data/stefanie/200307_necl2.nd2: [testng] [2024-10-20 02:03:07,198] [pool-1-thread-3] Initializing /data/qa-9183/aaron_multi_positions.nd2: [testng] [2024-10-20 02:03:08,063] [pool-1-thread-12] Initializing /data/qa-9207/n1e 570-wisp2 670-cdh6 -2(good 1-11)_xy1.nd2: [testng] [2024-10-20 02:03:08,922] [pool-1-thread-2] Initializing /data/kevin/test1.nd2: [testng] [2024-10-20 02:03:09,650] [pool-1-thread-10] Initializing /data/jose/08_SO4_Fasc100_at_surface_w_average.nd2: [testng] [2024-10-20 02:03:10,569] [pool-1-thread-8] Initializing /data/sarah/sarah_1011.nd2: [testng] [2024-10-20 02:03:14,129] [pool-1-thread-4] Initializing /data/plaissue/4channel_Zseries.nd2: [testng] [2024-10-20 02:03:14,880] [pool-1-thread-7] Initializing /data/stephen/Cody_Temp_Copy_crop.tif: [testng] [2024-10-20 02:03:16,109] [pool-1-thread-6] Initializing /data/pki/20120730 RGB 293-S1PR1-eGFP 8 compound 24hr v1.nd2: [testng] [2024-10-20 02:03:16,755] [pool-1-thread-2] Initializing /data/kaustav/cell field2.nd2: [testng] [2024-10-20 02:03:17,794] [pool-1-thread-12] Initializing /data/michael/stopped-acquisition/ND2 file does not open MCammer.nd2: [testng] [2024-10-20 02:03:18,710] [pool-1-thread-9] Initializing /data/public/aryeh/weekend002.nd2: [testng] [2024-10-20 02:03:20,146] [pool-1-thread-5] Initializing /data/public/jonas/multicolorTest.nd2: [testng] [2024-10-20 02:03:21,502] [pool-1-thread-3] Initializing /data/qa-4836/MGH media d10 large image_crop.nd2: [testng] [2024-10-20 02:03:22,325] [pool-1-thread-8] Initializing /data/kyle/B204.nd2: [testng] [2024-10-20 02:03:23,739] [pool-1-thread-10] Initializing /data/michael/opened skewed - C=1.tif: [testng] [2024-10-20 02:03:26,077] [pool-1-thread-4] Initializing /data/david/NDSequence011.nd2: [testng] [2024-10-20 02:03:28,308] [pool-1-thread-12] Initializing /data/venu/three_160807_control cells_4D.tif: [testng] [2024-10-20 02:03:31,796] [pool-1-thread-2] Initializing /data/john/M900117_CBP11555_C264M2_GAST_T1_s1.nd2: [testng] [2024-10-20 02:03:33,657] [pool-1-thread-7] Initializing /data/jcb/201101064/Fig 8B imp beta alone-MaxIP.nd2: [testng] [2024-10-20 02:03:37,763] [pool-1-thread-5] Initializing /data/yanmei/snapcells-vps1002.nd2: [testng] [2024-10-20 02:03:38,419] [pool-1-thread-4] Initializing /data/public/karl/sample_image.nd2: [testng] [2024-10-20 02:03:39,304] [pool-1-thread-10] Initializing /data/venu/1_140508,control.nd2: [testng] [2024-10-20 02:03:40,730] [pool-1-thread-12] Initializing /data/public/jonas/512c/cag_p5_simgc_2511_70ms22s_crop.nd2: [testng] [2024-10-20 02:03:41,419] [pool-1-thread-8] Initializing /data/qa-10370/example_JPIKE.nd2: [testng] [2024-10-20 02:03:42,179] [pool-1-thread-9] Initializing /data/stefanie/nd27.nd2: [testng] [2024-10-20 02:03:43,442] [pool-1-thread-7] Initializing /data/damir/Plate000_Well1_Seq0000.nd2: [testng] [2024-10-20 02:03:44,615] [pool-1-thread-5] Initializing /data/uli/2012_04_19_CHOegfr_03.nd2: [testng] [2024-10-20 02:03:46,580] [pool-1-thread-4] Initializing /data/venu/N202-15 20x001.nd2: [testng] [2024-10-20 02:03:48,347] [pool-1-thread-10] Initializing /data/qa-17695/sample.nd2: [testng] [2024-10-20 02:03:49,033] [pool-1-thread-9] Initializing /data/public/jonas/jonas_nd2Test/Exception9_e3.nd2: [testng] [2024-10-20 02:03:49,610] [pool-1-thread-12] Initializing /data/kevin/100nm_1.nd2: [testng] [2024-10-20 02:03:50,691] [pool-1-thread-8] Initializing /data/qa-9193/60x oil line scan 1 airy mono.nd2: [testng] [2024-10-20 02:03:51,342] [pool-1-thread-5] Initializing /data/dallas/150609_m597_ut8.nd2: [testng] [2024-10-20 02:03:53,642] [pool-1-thread-2] Initializing /data/venu/six_160807_control cells_4D.tif: [testng] [2024-10-20 02:03:56,068] [pool-1-thread-4] Initializing /data/venu/nd-three_channel-0.nd2: [testng] [2024-10-20 02:03:57,822] [pool-1-thread-8] Initializing /data/qa-7536/SampleND2-ChrisL.nd2: [testng] [2024-10-20 02:03:58,879] [pool-1-thread-9] Initializing /data/michael/tiling_problem_mcammer.nd2: [testng] [2024-10-20 02:03:59,813] [pool-1-thread-10] Initializing /data/bioformats2raw-184/Round1-Slot_01-Slide_01-Region_1-Stitched-Focused.nd2: [testng] [2024-10-20 02:07:59,221] [pool-1-thread-6] Initializing /data/venu/nd-three_channel-4.nd2: [testng] [2024-10-20 02:07:59,991] [pool-1-thread-12] Initializing /data/public/jonas/512c/wtf_DIC.nd2: [testng] [2024-10-20 02:08:00,562] [pool-1-thread-3] Initializing /data/bassem/A PSF1.nd2: [testng] [2024-10-20 02:08:02,881] [pool-1-thread-2] Initializing /data/public/jonas/100217_OD122_001.nd2: [testng] [2024-10-20 02:08:04,441] [pool-1-thread-3] Initializing /data/david/_t4h f.nd2: [testng] [2024-10-20 02:08:05,248] [pool-1-thread-4] Initializing /data/yarden/KH2_Well1_4x.nd2: [testng] [2024-10-20 02:08:07,623] [pool-1-thread-12] Initializing /data/imagesc-76438/FirstFileUsed_Slide2-20-1_ChannelBrightfield_Seq0001.nd2: [testng] [2024-10-20 02:08:08,155] [pool-1-thread-6] Initializing /data/aryeh/BY_GFP-Mup1_mCHERRY-VPH1_10-7-2012_Meytal-Waiss_XYZT_GOOD.nd2: [testng] [2024-10-20 02:08:08,839] [pool-1-thread-9] Initializing /data/public/jonas/movieSize/JJ_RNAi_hmr-1_001.nd2: [testng] [2024-10-20 02:08:09,543] [pool-1-thread-8] Initializing /data/plaissue/4channel_Zseries_2XYpoints_withROIandBinaryLayer.nd2: [testng] [2024-10-20 02:08:10,192] [pool-1-thread-2] Initializing /data/strand/Reconstructed ND acquisition1.nd2: [testng] [2024-10-20 02:08:10,908] [pool-1-thread-3] Initializing /data/qa-7303/CTR011.nd2: [testng] [2024-10-20 02:08:13,277] [pool-1-thread-12] Initializing /data/qa-5042/8xyPoints_3channels_00_30m235_all8xyIdentified.nd2: [testng] [2024-10-20 02:08:14,603] [pool-1-thread-6] Initializing /data/qa-7572/cells.nd2: [testng] [2024-10-20 02:08:15,560] [pool-1-thread-8] Initializing /data/qa-5042/8xyPoints_3channels_00_30m001_latelyOnly7xyIdentified.nd2: [testng] [2024-10-20 02:08:16,133] [pool-1-thread-9] Initializing /data/christophe/A1N1_Veh_2D_B4S.nd2: [testng] [2024-10-20 02:08:50,472] [pool-1-thread-3] Initializing /data/kevin/100&210nm_coat_1.nd2: [testng] [2024-10-20 02:08:51,874] [pool-1-thread-2] Initializing /data/public/aryeh/but3_cont200-1.nd2: [testng] [2024-10-20 02:08:57,227] [pool-1-thread-6] Initializing /data/public/jonas/jonas_nd2Test/Exception_2.nd2: [testng] [2024-10-20 02:08:57,790] [pool-1-thread-12] Initializing /data/qa-31330/Hotel_02-Slot_01-Slide_01-Region_1_Stitched.nd2: [testng] [2024-10-20 02:08:58,418] [pool-1-thread-8] Initializing /data/qa-4973/CX3+MCh Long Ova(4Henry)002.nd2: [testng] [2024-10-20 02:08:58,915] [pool-1-thread-4] Initializing /data/public/aryeh/MeOh_high_fluo_007.nd2: [testng] [2024-10-20 02:09:03,435] [pool-1-thread-8] Initializing /data/michael/3 stage positions 2 ch opens out of order with LOCI .nd2: [testng] [2024-10-20 02:09:04,111] [pool-1-thread-6] Initializing /data/bernhard/962.nd2: [testng] [2024-10-20 02:09:05,015] [pool-1-thread-12] Initializing /data/michael/opens_skewed.nd2: [testng] [2024-10-20 02:09:06,274] [pool-1-thread-4] Initializing /data/karsten/100720104_TestglasSchott_MM63_C10h.nd2: [testng] [2024-10-20 02:09:08,410] [pool-1-thread-5] Initializing /data/stefanie/nd026_xy2.nd2: [testng] [2024-10-20 02:09:09,191] [pool-1-thread-3] Initializing /data/plaissue/4channel_Zseries_withROIlayer.nd2: [testng] [2024-10-20 02:09:12,010] [pool-1-thread-8] Initializing /data/venu/nd-two_channel-4.nd2: [testng] [2024-10-20 02:09:13,836] [pool-1-thread-3] Initializing /data/public/aryeh/MeOh_high_fluo_011.nd2: [testng] [2024-10-20 02:09:15,868] [pool-1-thread-5] Initializing /data/imagesc-76438/Slide2-20-2_Region0003_ChannelBrightfield_Seq0013.nd2: [testng] [2024-10-20 02:09:21,249] [pool-1-thread-12] Initializing /data/qa-7535/JJ_Controls_D_004.nd2: [testng] [2024-10-20 02:09:22,391] [pool-1-thread-8] Initializing /data/qa-10100/20141002_V019+AFP1052n3-005.nd2: [testng] [2024-10-20 02:09:23,018] [pool-1-thread-3] Initializing /data/qa-4958/521_t1.nd2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13091, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 45 minutes 39 seconds Finished: SUCCESS