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Started by upstream project "BIOFORMATS-test-repo" build number 229 originally caused by: Started by upstream project "Trigger" build number 254 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins8166893398781994046.sh + '[' apng = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_35998_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:48:16,228 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:48:16,230 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 03:48:16,230 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:48:16,231 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:48:16,231 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:48:16,231 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:48:16,232 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:48:16,232 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:48:16,233 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:48:16,233 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:48:16,234 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:48:16,234 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:48:16,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:48:16,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:48:16,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:48:16,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:48:16,436 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:48:16,436 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:48:16,436 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:48:16,437 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:48:16,437 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 03:48:16,438 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 03:48:16,438 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 205 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-20 03:48:16,449] [main] java.version = 17.0.2 [testng] 03:48:16,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:48:16,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:48:16,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-20_03-48-16.log] [testng] 03:48:16,500 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-20 03:48:16,502] [main] testng.directory = /data [testng] [2024-10-20 03:48:16,502] [main] testng.configDirectory = /config [testng] [2024-10-20 03:48:16,512] [main] testng.multiplier = 1.0 [testng] [2024-10-20 03:48:16,512] [main] testng.in-memory = false [testng] [2024-10-20 03:48:16,512] [main] testng.allow-missing = false [testng] [2024-10-20 03:48:16,513] [main] user.language = en [testng] [2024-10-20 03:48:16,513] [main] user.country = ${user.country} [testng] [2024-10-20 03:48:16,513] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-20 03:48:17,017] [main] ---------------------------------------- [testng] [2024-10-20 03:48:17,017] [main] Total files: 21 [testng] [2024-10-20 03:48:17,018] [main] Scan time: 0.504 s (24 ms/file) [testng] [2024-10-20 03:48:17,018] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-20 03:48:19,990] [pool-1-thread-1] Initializing /data/samples/MoonPhases.png: [testng] 03:48:19,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:48:19,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:48:19,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-20_03-48-19.log] [testng] 03:48:19,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31b3dc09 - End of configuration. [testng] [2024-10-20 03:48:20,076] [pool-1-thread-12] Initializing /data/samples/Sun.png: [testng] 03:48:20,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:48:20,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:48:20,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-20_03-48-20.log] [testng] 03:48:20,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54b5c115 - End of configuration. [testng] [2024-10-20 03:48:20,115] [pool-1-thread-11] Initializing /data/qa-7473/x.png: [testng] 03:48:20,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:48:20,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:48:20,116 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-20_03-48-20.log] [testng] 03:48:20,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c3d5a57 - End of configuration. [testng] [2024-10-20 03:48:20,153] [pool-1-thread-10] Initializing /data/samples/spinfox.png: [testng] 03:48:20,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:48:20,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:48:20,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-20_03-48-20.log] [testng] 03:48:20,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@460689f0 - End of configuration. [testng] [2024-10-20 03:48:20,188] [pool-1-thread-9] Initializing /data/samples/daniel_coltri_one.png: [testng] 03:48:20,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:48:20,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:48:20,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-20_03-48-20.log] [testng] 03:48:20,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5206cd29 - End of configuration. [testng] [2024-10-20 03:48:20,225] [pool-1-thread-8] Initializing /data/samples/StarV838.png: [testng] 03:48:20,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:48:20,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:48:20,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-20_03-48-20.log] [testng] 03:48:20,227 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48bb6663 - End of configuration. [testng] [2024-10-20 03:48:20,270] [pool-1-thread-7] Initializing /data/samples/william_wong01.png: [testng] 03:48:20,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:48:20,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:48:20,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-20_03-48-20.log] [testng] 03:48:20,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6eb0ac85 - End of configuration. [testng] [2024-10-20 03:48:20,318] [pool-1-thread-6] Initializing /data/samples/william_wong04.png: [testng] 03:48:20,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:48:20,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:48:20,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-20_03-48-20.log] [testng] 03:48:20,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ade370e - End of configuration. [testng] [2024-10-20 03:48:20,362] [pool-1-thread-5] Initializing /data/colin/test.sfstdge.png: [testng] 03:48:20,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:48:20,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:48:20,364 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-20_03-48-20.log] [testng] 03:48:20,364 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bc7f0e1 - End of configuration. [testng] [2024-10-20 03:48:20,406] [pool-1-thread-4] Initializing /data/samples/william_wong02.png: [testng] 03:48:20,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:48:20,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:48:20,407 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-20_03-48-20.log] [testng] 03:48:20,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75a6c039 - End of configuration. [testng] [2024-10-20 03:48:20,453] [pool-1-thread-3] Initializing /data/samples/monkey_apng.png: [testng] 03:48:20,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:48:20,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:48:20,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-20_03-48-20.log] [testng] 03:48:20,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61c670ec - End of configuration. [testng] [2024-10-20 03:48:20,498] [pool-1-thread-2] Initializing /data/samples/orbit.png: [testng] 03:48:20,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:48:20,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:48:20,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-20_03-48-20.log] [testng] 03:48:20,500 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b0f2a78 - End of configuration. [testng] [2024-10-20 03:48:22,593] [pool-1-thread-11] Initializing /data/qa-7473/n.tif: [testng] [2024-10-20 03:48:23,903] [pool-1-thread-5] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-10-20 03:48:24,572] [pool-1-thread-6] Initializing /data/samples/joanna_viera01.png: [testng] [2024-10-20 03:48:24,621] [pool-1-thread-4] Initializing /data/samples/phug_logo.png: [testng] [2024-10-20 03:48:24,666] [pool-1-thread-1] Initializing /data/samples/chompy2.png: [testng] [2024-10-20 03:48:24,708] [pool-1-thread-8] Initializing /data/samples/william_wong05.png: [testng] [2024-10-20 03:48:24,758] [pool-1-thread-7] Initializing /data/samples/atom.png: [testng] [2024-10-20 03:48:24,801] [pool-1-thread-12] Initializing /data/samples/Matrix.png: [testng] [2024-10-20 03:48:24,843] [pool-1-thread-3] Initializing /data/samples/daniel_coltri_two.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 18 seconds Finished: SUCCESS