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Started by upstream project "BIOFORMATS-test-repo" build number 231 originally caused by: Started by upstream project "Trigger" build number 256 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins12478192446630472875.sh + '[' targa = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36237_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:43:40,107 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:43:40,108 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 01:43:40,108 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:43:40,109 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:43:40,110 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:43:40,110 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:43:40,110 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:43:40,110 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:43:40,111 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:43:40,111 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:43:40,112 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:43:40,112 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:43:40,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:43:40,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:43:40,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:43:40,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:43:40,302 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:43:40,302 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:43:40,302 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:43:40,303 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:43:40,303 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 01:43:40,303 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 01:43:40,303 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-22 01:43:40,312] [main] java.version = 11.0.16 [testng] 01:43:40,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:43:40,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:40,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-22_01-43-40.log] [testng] 01:43:40,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-22 01:43:40,360] [main] testng.directory = /data [testng] [2024-10-22 01:43:40,360] [main] testng.configDirectory = /config [testng] [2024-10-22 01:43:40,372] [main] testng.multiplier = 1.0 [testng] [2024-10-22 01:43:40,374] [main] testng.in-memory = false [testng] [2024-10-22 01:43:40,374] [main] testng.allow-missing = false [testng] [2024-10-22 01:43:40,374] [main] user.language = en [testng] [2024-10-22 01:43:40,374] [main] user.country = ${user.country} [testng] [2024-10-22 01:43:40,374] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-22 01:43:41,120] [main] ---------------------------------------- [testng] [2024-10-22 01:43:41,120] [main] Total files: 21 [testng] [2024-10-22 01:43:41,120] [main] Scan time: 0.746 s (35 ms/file) [testng] [2024-10-22 01:43:41,121] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-22 01:43:51,193] [pool-1-thread-1] Initializing /data/samples/XING_T24.TGA: [testng] 01:43:51,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:43:51,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:51,196 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-22_01-43-51.log] [testng] 01:43:51,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@432a221e - End of configuration. [testng] [2024-10-22 01:43:51,529] [pool-1-thread-12] Initializing /data/samples/FLAG_B24.TGA: [testng] 01:43:51,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:43:51,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:51,530 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-22_01-43-51.log] [testng] 01:43:51,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69b840dd - End of configuration. [testng] [2024-10-22 01:43:51,974] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA: [testng] 01:43:51,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:43:51,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:51,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-22_01-43-51.log] [testng] 01:43:51,976 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a21fad6 - End of configuration. [testng] [2024-10-22 01:43:52,368] [pool-1-thread-10] Initializing /data/samples/FLAG_T16.TGA: [testng] 01:43:52,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:43:52,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:52,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-22_01-43-52.log] [testng] 01:43:52,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55c6db80 - End of configuration. [testng] [2024-10-22 01:43:52,703] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA: [testng] 01:43:52,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:43:52,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:52,704 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-22_01-43-52.log] [testng] 01:43:52,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25af6311 - End of configuration. [testng] [2024-10-22 01:43:53,043] [pool-1-thread-8] Initializing /data/samples/CCM8.TGA: [testng] 01:43:53,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:43:53,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:53,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-22_01-43-53.log] [testng] 01:43:53,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28cc416f - End of configuration. [testng] [2024-10-22 01:43:53,336] [pool-1-thread-7] Initializing /data/samples/UBW8.TGA: [testng] 01:43:53,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:43:53,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:53,338 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-22_01-43-53.log] [testng] 01:43:53,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52cff775 - End of configuration. [testng] [2024-10-22 01:43:53,592] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] 01:43:53,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:43:53,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:53,593 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-22_01-43-53.log] [testng] 01:43:53,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2487ef64 - End of configuration. [testng] [2024-10-22 01:43:53,854] [pool-1-thread-5] Initializing /data/samples/XING_B24.TGA: [testng] 01:43:53,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:43:53,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:53,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-22_01-43-53.log] [testng] 01:43:53,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dcbb3c9 - End of configuration. [testng] [2024-10-22 01:43:54,112] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA: [testng] 01:43:54,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:43:54,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:54,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-22_01-43-54.log] [testng] 01:43:54,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41f780db - End of configuration. [testng] [2024-10-22 01:43:54,763] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA: [testng] 01:43:54,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:43:54,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:54,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-22_01-43-54.log] [testng] 01:43:54,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5144c452 - End of configuration. [testng] [2024-10-22 01:43:55,088] [pool-1-thread-2] Initializing /data/samples/FLAG_B32.TGA: [testng] 01:43:55,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:43:55,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:43:55,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-22_01-43-55.log] [testng] 01:43:55,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d477949 - End of configuration. [testng] [2024-10-22 01:43:59,549] [pool-1-thread-10] Initializing /data/samples/UTC16.TGA: [testng] [2024-10-22 01:43:59,980] [pool-1-thread-12] Initializing /data/samples/XING_B32.TGA: [testng] [2024-10-22 01:44:00,593] [pool-1-thread-7] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-10-22 01:44:00,920] [pool-1-thread-6] Initializing /data/samples/UCM8.TGA: [testng] [2024-10-22 01:44:01,212] [pool-1-thread-9] Initializing /data/samples/CBW8.TGA: [testng] [2024-10-22 01:44:01,583] [pool-1-thread-3] Initializing /data/samples/XING_T16.TGA: [testng] [2024-10-22 01:44:01,879] [pool-1-thread-8] Initializing /data/samples/XING_B16.TGA: [testng] [2024-10-22 01:44:02,208] [pool-1-thread-5] Initializing /data/samples/UTC24.TGA: [testng] [2024-10-22 01:44:02,642] [pool-1-thread-1] Initializing /data/samples/XING_T32.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 29 seconds Finished: SUCCESS