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Started by upstream project "BIOFORMATS-test-repo" build number 231 originally caused by: Started by upstream project "Trigger" build number 256 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins14604454541228620.sh + '[' avi = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36285_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 03:00:03,588 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:00:03,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 03:00:03,590 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:00:03,591 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:00:03,592 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:00:03,592 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:00:03,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:00:03,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:00:03,593 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:00:03,593 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:00:03,594 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:00:03,594 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:00:03,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:00:03,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:00:03,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:00:03,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:00:03,801 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:00:03,801 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:00:03,801 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:00:03,801 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:00:03,801 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 03:00:03,802 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 03:00:03,802 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 209 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-22 03:00:03,811] [main] java.version = 11.0.16 [testng] 03:00:03,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:00:03,815 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:03,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-22_03-00-03.log] [testng] 03:00:03,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-22 03:00:03,865] [main] testng.directory = /data [testng] [2024-10-22 03:00:03,865] [main] testng.configDirectory = /config [testng] [2024-10-22 03:00:03,875] [main] testng.multiplier = 1.0 [testng] [2024-10-22 03:00:03,877] [main] testng.in-memory = false [testng] [2024-10-22 03:00:03,878] [main] testng.allow-missing = false [testng] [2024-10-22 03:00:03,878] [main] user.language = en [testng] [2024-10-22 03:00:03,878] [main] user.country = ${user.country} [testng] [2024-10-22 03:00:03,878] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-22 03:00:14,759] [main] ---------------------------------------- [testng] [2024-10-22 03:00:14,759] [main] Total files: 40 [testng] [2024-10-22 03:00:14,759] [main] Scan time: 10.881 s (272 ms/file) [testng] [2024-10-22 03:00:14,759] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-22 03:01:04,360] [pool-1-thread-1] Initializing /data/curtis/mri-stack-bf.avi: [testng] 03:01:04,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:01:04,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:04,363 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-22_03-01-04.log] [testng] 03:01:04,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ce7cb44 - End of configuration. [testng] [2024-10-22 03:01:04,644] [pool-1-thread-12] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] 03:01:04,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:01:04,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:04,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-22_03-01-04.log] [testng] 03:01:04,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23b225b5 - End of configuration. [testng] [2024-10-22 03:01:04,800] [pool-1-thread-11] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] 03:01:04,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:01:04,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:04,801 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-22_03-01-04.log] [testng] 03:01:04,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@442eaed1 - End of configuration. [testng] [2024-10-22 03:01:04,978] [pool-1-thread-10] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] 03:01:04,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:01:04,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:04,979 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-22_03-01-04.log] [testng] 03:01:04,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@603c4e6d - End of configuration. [testng] [2024-10-22 03:01:05,204] [pool-1-thread-9] Initializing /data/simon/24_bit_problem.avi: [testng] 03:01:05,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:01:05,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:05,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-22_03-01-05.log] [testng] 03:01:05,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@120795c9 - End of configuration. [testng] [2024-10-22 03:01:05,401] [pool-1-thread-8] Initializing /data/qa-11011/M-flow10001.avi: [testng] 03:01:05,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:01:05,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:05,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-22_03-01-05.log] [testng] 03:01:05,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@604d5ca9 - End of configuration. [testng] [2024-10-22 03:01:05,645] [pool-1-thread-7] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 03:01:05,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:01:05,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:05,645 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-22_03-01-05.log] [testng] 03:01:05,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b56f1ea - End of configuration. [testng] [2024-10-22 03:01:05,822] [pool-1-thread-6] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] 03:01:05,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:01:05,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:05,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-22_03-01-05.log] [testng] 03:01:05,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65f9e632 - End of configuration. [testng] [2024-10-22 03:01:06,022] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 03:01:06,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:01:06,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:06,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-22_03-01-06.log] [testng] 03:01:06,023 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d699a39 - End of configuration. [testng] [2024-10-22 03:01:06,263] [pool-1-thread-4] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] 03:01:06,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:01:06,264 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:06,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-22_03-01-06.log] [testng] 03:01:06,265 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3daafbe4 - End of configuration. [testng] [2024-10-22 03:01:06,452] [pool-1-thread-3] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] 03:01:06,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:01:06,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:06,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-22_03-01-06.log] [testng] 03:01:06,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23d31132 - End of configuration. [testng] [2024-10-22 03:01:06,786] [pool-1-thread-2] Initializing /data/qa-7450/MVI_3610.AVI: [testng] 03:01:06,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:01:06,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:01:06,787 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-22_03-01-06.log] [testng] 03:01:06,787 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d28cee2 - End of configuration. [testng] [2024-10-22 03:01:11,165] [pool-1-thread-12] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2024-10-22 03:01:11,761] [pool-1-thread-7] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-10-22 03:01:11,968] [pool-1-thread-1] Initializing /data/chris/APZ04_009.avi: [testng] [2024-10-22 03:01:12,998] [pool-1-thread-11] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-10-22 03:01:13,337] [pool-1-thread-3] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2024-10-22 03:01:13,793] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2024-10-22 03:01:13,956] [pool-1-thread-6] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [2024-10-22 03:01:14,140] [pool-1-thread-10] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-10-22 03:01:14,396] [pool-1-thread-4] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2024-10-22 03:01:14,611] [pool-1-thread-2] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-10-22 03:01:14,817] [pool-1-thread-9] Initializing /data/kurt/63x_6um.avi: [testng] [2024-10-22 03:01:15,247] [pool-1-thread-8] Initializing /data/william/worm.avi: [testng] [2024-10-22 03:01:17,858] [pool-1-thread-5] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] [2024-10-22 03:01:18,072] [pool-1-thread-7] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2024-10-22 03:01:18,327] [pool-1-thread-11] Initializing /data/kurt/40x_6um_2.avi: [testng] [2024-10-22 03:01:18,577] [pool-1-thread-12] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-10-22 03:01:18,781] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-10-22 03:01:18,970] [pool-1-thread-6] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] [2024-10-22 03:01:19,143] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2024-10-22 03:01:19,328] [pool-1-thread-4] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-10-22 03:01:20,340] [pool-1-thread-9] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-10-22 03:01:20,791] [pool-1-thread-10] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2024-10-22 03:01:23,516] [pool-1-thread-12] Initializing /data/ascb/TIRF.avi: [testng] [2024-10-22 03:01:23,904] [pool-1-thread-3] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-10-22 03:01:24,229] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [2024-10-22 03:01:24,541] [pool-1-thread-7] Initializing /data/kurt/40x_6um.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 34 seconds Finished: SUCCESS