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Started by upstream project "BIOFORMATS-test-repo" build number 231 originally caused by: Started by upstream project "Trigger" build number 256 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins9916773982274607484.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36294_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 03:52:23,567 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:52:23,569 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 03:52:23,569 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:52:23,570 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:52:23,570 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:52:23,571 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:52:23,571 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:52:23,571 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:52:23,572 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:52:23,572 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:52:23,572 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:52:23,573 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:52:23,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:52:23,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:52:23,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:52:23,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:52:23,765 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:52:23,765 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:52:23,765 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:52:23,765 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:52:23,766 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 03:52:23,766 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 03:52:23,766 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-22 03:52:23,775] [main] java.version = 11.0.16 [testng] 03:52:23,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:52:23,778 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:23,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-22_03-52-23.log] [testng] 03:52:23,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-22 03:52:23,825] [main] testng.directory = /data [testng] [2024-10-22 03:52:23,825] [main] testng.configDirectory = /config [testng] [2024-10-22 03:52:23,835] [main] testng.multiplier = 1.0 [testng] [2024-10-22 03:52:23,836] [main] testng.in-memory = false [testng] [2024-10-22 03:52:23,837] [main] testng.allow-missing = false [testng] [2024-10-22 03:52:23,837] [main] user.language = en [testng] [2024-10-22 03:52:23,837] [main] user.country = ${user.country} [testng] [2024-10-22 03:52:23,837] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-22 03:52:24,467] [main] ---------------------------------------- [testng] [2024-10-22 03:52:24,467] [main] Total files: 19 [testng] [2024-10-22 03:52:24,467] [main] Scan time: 0.63 s (33 ms/file) [testng] [2024-10-22 03:52:24,468] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-22 03:52:29,680] [pool-1-thread-1] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] 03:52:29,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:52:29,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:29,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-22_03-52-29.log] [testng] 03:52:29,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@203e1169 - End of configuration. [testng] [2024-10-22 03:52:29,908] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 03:52:29,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:52:29,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:29,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-22_03-52-29.log] [testng] 03:52:29,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ee01919 - End of configuration. [testng] [2024-10-22 03:52:30,139] [pool-1-thread-11] Initializing /data/samples/1600R PICT0005.MRW: [testng] 03:52:30,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:52:30,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:30,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-22_03-52-30.log] [testng] 03:52:30,141 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cb6b5f2 - End of configuration. [testng] [2024-10-22 03:52:30,482] [pool-1-thread-10] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] 03:52:30,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:52:30,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:30,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-22_03-52-30.log] [testng] 03:52:30,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bb8fc17 - End of configuration. [testng] [2024-10-22 03:52:30,762] [pool-1-thread-9] Initializing /data/samples/800R PICT0010.MRW: [testng] 03:52:30,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:52:30,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:30,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-22_03-52-30.log] [testng] 03:52:30,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@116edaea - End of configuration. [testng] [2024-10-22 03:52:31,013] [pool-1-thread-8] Initializing /data/samples/100R PICT0001.MRW: [testng] 03:52:31,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:52:31,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:31,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-22_03-52-31.log] [testng] 03:52:31,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f00b979 - End of configuration. [testng] [2024-10-22 03:52:31,235] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 03:52:31,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:52:31,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:31,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-22_03-52-31.log] [testng] 03:52:31,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@351e4171 - End of configuration. [testng] [2024-10-22 03:52:31,463] [pool-1-thread-6] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 03:52:31,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:52:31,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:31,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-22_03-52-31.log] [testng] 03:52:31,465 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16c99b7a - End of configuration. [testng] [2024-10-22 03:52:31,723] [pool-1-thread-5] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 03:52:31,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:52:31,724 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:31,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-22_03-52-31.log] [testng] 03:52:31,725 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a0e7e31 - End of configuration. [testng] [2024-10-22 03:52:31,982] [pool-1-thread-4] Initializing /data/samples/200R PICT0002.MRW: [testng] 03:52:31,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:52:31,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:31,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-22_03-52-31.log] [testng] 03:52:31,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4426443 - End of configuration. [testng] [2024-10-22 03:52:32,286] [pool-1-thread-3] Initializing /data/samples/400R PICT0003.MRW: [testng] 03:52:32,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:52:32,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:32,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-22_03-52-32.log] [testng] 03:52:32,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bd8b34 - End of configuration. [testng] [2024-10-22 03:52:32,506] [pool-1-thread-2] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] 03:52:32,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:52:32,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:32,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-22_03-52-32.log] [testng] 03:52:32,507 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4283052f - End of configuration. [testng] [2024-10-22 03:52:40,731] [pool-1-thread-6] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] [2024-10-22 03:52:40,987] [pool-1-thread-4] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] [2024-10-22 03:52:41,220] [pool-1-thread-11] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] [2024-10-22 03:52:41,596] [pool-1-thread-10] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] [2024-10-22 03:52:41,833] [pool-1-thread-5] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] [2024-10-22 03:52:42,065] [pool-1-thread-8] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] [2024-10-22 03:52:42,292] [pool-1-thread-9] Initializing /data/samples/3200R PICT0006.MRW: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 27 seconds Finished: SUCCESS