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Started by upstream project "BIOFORMATS-test-repo" build number 231 originally caused by: Started by upstream project "Trigger" build number 256 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins8202780389477363066.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36354_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 05:43:49,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 05:43:49,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 05:43:49,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:43:49,800 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:43:49,801 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:43:49,801 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:43:49,801 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:43:49,801 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:43:49,802 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:43:49,802 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:43:49,803 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:43:49,803 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:43:49,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:43:49,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:43:49,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:43:49,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:43:49,985 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:43:49,986 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:43:49,986 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:43:49,986 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:43:49,986 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 05:43:49,987 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 05:43:49,987 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 185 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-22 05:43:49,995] [main] java.version = 11.0.16 [testng] 05:43:49,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:43:49,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:43:50,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-22_05-43-50.log] [testng] 05:43:50,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-22 05:43:50,041] [main] testng.directory = /data [testng] [2024-10-22 05:43:50,041] [main] testng.configDirectory = /config [testng] [2024-10-22 05:43:50,050] [main] testng.multiplier = 1.0 [testng] [2024-10-22 05:43:50,051] [main] testng.in-memory = false [testng] [2024-10-22 05:43:50,051] [main] testng.allow-missing = false [testng] [2024-10-22 05:43:50,051] [main] user.language = en [testng] [2024-10-22 05:43:50,051] [main] user.country = ${user.country} [testng] [2024-10-22 05:43:50,051] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-22 05:43:56,627] [main] ---------------------------------------- [testng] [2024-10-22 05:43:56,627] [main] Total files: 17 [testng] [2024-10-22 05:43:56,627] [main] Scan time: 6.575 s (386 ms/file) [testng] [2024-10-22 05:43:56,627] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-22 05:44:00,420] [pool-1-thread-1] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 05:44:00,421 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:44:00,422 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:44:00,423 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-22_05-44-00.log] [testng] 05:44:00,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48444990 - End of configuration. [testng] [2024-10-22 05:44:00,617] [pool-1-thread-12] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 05:44:00,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:44:00,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:44:00,662 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-22_05-44-00.log] [testng] 05:44:00,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7725333a - End of configuration. [testng] [2024-10-22 05:44:00,849] [pool-1-thread-11] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] 05:44:00,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:44:00,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:44:00,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-22_05-44-00.log] [testng] 05:44:00,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69313113 - End of configuration. [testng] [2024-10-22 05:44:01,064] [pool-1-thread-10] Initializing /data/samples/16bit 320x256x1.ipm: [testng] 05:44:01,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:44:01,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:44:01,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-22_05-44-01.log] [testng] 05:44:01,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f4d1ca - End of configuration. [testng] [2024-10-22 05:44:01,242] [pool-1-thread-9] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] 05:44:01,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:44:01,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:44:01,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-22_05-44-01.log] [testng] 05:44:01,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1adfcd6f - End of configuration. [testng] [2024-10-22 05:44:01,431] [pool-1-thread-8] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 05:44:01,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:44:01,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:44:01,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-22_05-44-01.log] [testng] 05:44:01,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bc242f6 - End of configuration. [testng] [2024-10-22 05:44:01,621] [pool-1-thread-7] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] 05:44:01,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:44:01,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:44:01,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-22_05-44-01.log] [testng] 05:44:01,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b9e3935 - End of configuration. [testng] [2024-10-22 05:44:01,816] [pool-1-thread-6] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] 05:44:01,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:44:01,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:44:01,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-22_05-44-01.log] [testng] 05:44:01,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71559fa0 - End of configuration. [testng] [2024-10-22 05:44:02,102] [pool-1-thread-5] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] 05:44:02,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:44:02,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:44:02,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-22_05-44-02.log] [testng] 05:44:02,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3710da - End of configuration. [testng] [2024-10-22 05:44:02,282] [pool-1-thread-4] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 05:44:02,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:44:02,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:44:02,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-22_05-44-02.log] [testng] 05:44:02,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e206dd - End of configuration. [testng] [2024-10-22 05:44:02,482] [pool-1-thread-3] Initializing /data/samples/24bit 300x200x3.ipm: [testng] 05:44:02,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:44:02,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:44:02,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-22_05-44-02.log] [testng] 05:44:02,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59d1f676 - End of configuration. [testng] [2024-10-22 05:44:02,830] [pool-1-thread-2] Initializing /data/christopher/Color48 Copy.ipm: [testng] 05:44:02,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:44:02,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:44:02,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-22_05-44-02.log] [testng] 05:44:02,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a6b0ec3 - End of configuration. [testng] [2024-10-22 05:44:07,237] [pool-1-thread-3] Initializing /data/samples/48bit 150x100x3.ipm: [testng] [2024-10-22 05:44:07,487] [pool-1-thread-8] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] [2024-10-22 05:44:07,713] [pool-1-thread-11] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] [2024-10-22 05:44:07,968] [pool-1-thread-6] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] [2024-10-22 05:44:08,206] [pool-1-thread-2] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 23 seconds Finished: SUCCESS