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Started by upstream project "BIOFORMATS-test-repo" build number 234 originally caused by: Started by upstream project "Trigger" build number 259 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins13618133380865756693.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36708_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:23:40,085 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:23:40,086 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 01:23:40,086 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:40,088 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:40,088 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:23:40,088 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:23:40,088 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:23:40,088 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:40,089 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:40,089 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:23:40,089 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:23:40,089 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:23:40,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:23:40,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:23:40,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:23:40,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:23:40,347 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:23:40,347 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:23:40,347 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:23:40,347 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:23:40,347 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 01:23:40,348 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 01:23:40,348 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 259 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-25 01:23:40,358] [main] java.version = 1.8.0_342 [testng] 01:23:40,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:23:40,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:40,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-25_01-23-40.log] [testng] 01:23:40,406 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-25 01:23:40,408] [main] testng.directory = /data [testng] [2024-10-25 01:23:40,409] [main] testng.configDirectory = /config [testng] [2024-10-25 01:23:40,421] [main] testng.multiplier = 1.0 [testng] [2024-10-25 01:23:40,421] [main] testng.in-memory = false [testng] [2024-10-25 01:23:40,421] [main] testng.allow-missing = false [testng] [2024-10-25 01:23:40,421] [main] user.language = en [testng] [2024-10-25 01:23:40,421] [main] user.country = ${user.country} [testng] [2024-10-25 01:23:40,421] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-25 01:24:01,684] [main] ---------------------------------------- [testng] [2024-10-25 01:24:01,684] [main] Total files: 21 [testng] [2024-10-25 01:24:01,684] [main] Scan time: 21.263 s (1012 ms/file) [testng] [2024-10-25 01:24:01,684] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-25 01:24:35,348] [pool-1-thread-1] Initializing /data/stefan/001_q04.txt: [testng] 01:24:35,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:24:35,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:35,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-25_01-24-35.log] [testng] 01:24:35,349 |-INFO in ch.qos.logback.core.sift.SiftProcessor@112a104c - End of configuration. [testng] [2024-10-25 01:24:36,427] [pool-1-thread-12] Initializing /data/stefan/001_q11.txt: [testng] 01:24:36,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:24:36,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:36,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-25_01-24-36.log] [testng] 01:24:36,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@614012fd - End of configuration. [testng] [2024-10-25 01:24:38,320] [pool-1-thread-11] Initializing /data/stefan/001_q03.txt: [testng] 01:24:38,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:24:38,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:38,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-25_01-24-38.log] [testng] 01:24:38,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@175aeb11 - End of configuration. [testng] [2024-10-25 01:24:39,311] [pool-1-thread-10] Initializing /data/stefan/001_q07.txt: [testng] 01:24:39,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:24:39,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:39,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-25_01-24-39.log] [testng] 01:24:39,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a331b93 - End of configuration. [testng] [2024-10-25 01:24:41,378] [pool-1-thread-9] Initializing /data/stefan/001_q13.txt: [testng] 01:24:41,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:24:41,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:41,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-25_01-24-41.log] [testng] 01:24:41,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47209527 - End of configuration. [testng] [2024-10-25 01:24:43,094] [pool-1-thread-8] Initializing /data/stefan/001_q18.txt: [testng] 01:24:43,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:24:43,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:43,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-25_01-24-43.log] [testng] 01:24:43,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b823c83 - End of configuration. [testng] [2024-10-25 01:24:44,975] [pool-1-thread-7] Initializing /data/stefan/001_q01.txt: [testng] 01:24:44,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:24:44,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:44,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-25_01-24-44.log] [testng] 01:24:44,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a0effae - End of configuration. [testng] [2024-10-25 01:24:46,097] [pool-1-thread-6] Initializing /data/stefan/001_q15.txt: [testng] 01:24:46,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:24:46,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:46,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-25_01-24-46.log] [testng] 01:24:46,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@700ccf17 - End of configuration. [testng] [2024-10-25 01:24:47,867] [pool-1-thread-5] Initializing /data/stefan/001_q10.txt: [testng] 01:24:47,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:24:47,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:47,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-25_01-24-47.log] [testng] 01:24:47,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46e6abbd - End of configuration. [testng] [2024-10-25 01:24:50,173] [pool-1-thread-4] Initializing /data/stefan/001_q05.txt: [testng] 01:24:50,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:24:50,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:50,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-25_01-24-50.log] [testng] 01:24:50,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e439840 - End of configuration. [testng] [2024-10-25 01:24:51,102] [pool-1-thread-3] Initializing /data/stefan/001_q09.txt: [testng] 01:24:51,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:24:51,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:51,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-25_01-24-51.log] [testng] 01:24:51,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b025643 - End of configuration. [testng] [2024-10-25 01:24:52,982] [pool-1-thread-2] Initializing /data/stefan/001_q06.txt: [testng] 01:24:52,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:24:52,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:52,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-25_01-24-52.log] [testng] 01:24:52,983 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3136bb62 - End of configuration. [testng] [2024-10-25 01:25:12,594] [pool-1-thread-7] Initializing /data/stefan/001_q14.txt: [testng] [2024-10-25 01:25:13,887] [pool-1-thread-11] Initializing /data/stefan/001_q16.txt: [testng] [2024-10-25 01:25:15,028] [pool-1-thread-1] Initializing /data/stefan/001_q08.txt: [testng] [2024-10-25 01:25:16,894] [pool-1-thread-2] Initializing /data/stefan/001_q12.txt: [testng] [2024-10-25 01:25:18,927] [pool-1-thread-9] Initializing /data/stefan/001_q02.txt: [testng] [2024-10-25 01:25:20,285] [pool-1-thread-6] Initializing /data/stefan/001_q17.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 1 second Finished: SUCCESS