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Started by upstream project "BIOFORMATS-test-repo" build number 234 originally caused by: Started by upstream project "Trigger" build number 259 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins14144801336418107161.sh + '[' specs = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36719_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:35:16,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:35:16,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:35:16,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:35:16,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:35:16,983 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:35:16,984 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:35:16,984 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:35:16,984 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:35:16,984 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration. [testng] 01:35:16,985 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point [testng] 01:35:16,985 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 476 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-25 01:35:16,997] [main] java.version = 1.8.0_342 [testng] 01:35:17,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:35:17,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:35:17,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-25_01-35-17.log] [testng] 01:35:17,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-25 01:35:17,128] [main] testng.directory = /data [testng] [2024-10-25 01:35:17,128] [main] testng.configDirectory = /config [testng] [2024-10-25 01:35:17,142] [main] testng.multiplier = 1.0 [testng] [2024-10-25 01:35:17,143] [main] testng.in-memory = false [testng] [2024-10-25 01:35:17,143] [main] testng.allow-missing = false [testng] [2024-10-25 01:35:17,143] [main] user.language = en [testng] [2024-10-25 01:35:17,143] [main] user.country = ${user.country} [testng] [2024-10-25 01:35:17,143] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-25 01:37:16,323] [main] ---------------------------------------- [testng] [2024-10-25 01:37:16,323] [main] Total files: 226 [testng] [2024-10-25 01:37:16,323] [main] Scan time: 119.18 s (527 ms/file) [testng] [2024-10-25 01:37:16,323] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-25 01:38:49,448] [pool-1-thread-1] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 01:38:49,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:38:49,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:49,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-25_01-38-49.log] [testng] 01:38:49,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@650b08a8 - End of configuration. [testng] [2024-10-25 01:38:49,487] [pool-1-thread-12] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] 01:38:49,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:38:49,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:49,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-25_01-38-49.log] [testng] 01:38:49,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e16526 - End of configuration. [testng] [2024-10-25 01:38:49,808] [pool-1-thread-11] Initializing /data/fluoview/Sample_XT.tif: [testng] 01:38:49,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:38:49,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:49,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-25_01-38-49.log] [testng] 01:38:49,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f1d473f - End of configuration. [testng] [2024-10-25 01:38:50,127] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] 01:38:50,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:38:50,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:50,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-25_01-38-50.log] [testng] 01:38:50,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b63b2df - End of configuration. [testng] [2024-10-25 01:38:50,207] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 01:38:50,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:38:50,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:50,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-25_01-38-50.log] [testng] 01:38:50,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15a08ac9 - End of configuration. [testng] [2024-10-25 01:38:50,429] [pool-1-thread-8] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 01:38:50,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:38:50,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:50,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-25_01-38-50.log] [testng] 01:38:50,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cf12664 - End of configuration. [testng] [2024-10-25 01:38:50,719] [pool-1-thread-7] Initializing /data/iplab/Blend_Final.IPL: [testng] 01:38:50,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:38:50,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:50,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-25_01-38-50.log] [testng] 01:38:50,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a98931a - End of configuration. [testng] [2024-10-25 01:38:50,747] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 01:38:50,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:38:50,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:50,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-25_01-38-50.log] [testng] 01:38:50,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65aa0 - End of configuration. [testng] [2024-10-25 01:38:50,846] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] 01:38:50,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:38:50,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:50,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-25_01-38-50.log] [testng] 01:38:50,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cb8bd56 - End of configuration. [testng] [2024-10-25 01:38:50,869] [pool-1-thread-4] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] 01:38:50,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:38:50,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:50,870 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-25_01-38-50.log] [testng] 01:38:50,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61e1b965 - End of configuration. [testng] [2024-10-25 01:38:50,890] [pool-1-thread-3] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] 01:38:50,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:38:50,891 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:50,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-25_01-38-50.log] [testng] 01:38:50,892 |-INFO in ch.qos.logback.core.sift.SiftProcessor@769cf8f - End of configuration. [testng] [2024-10-25 01:38:51,071] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 01:38:51,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:38:51,072 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:38:51,073 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-25_01-38-51.log] [testng] 01:38:51,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69f829b6 - End of configuration. [testng] [2024-10-25 01:38:53,164] [pool-1-thread-10] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-10-25 01:38:53,500] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-10-25 01:38:53,573] [pool-1-thread-1] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2024-10-25 01:38:53,626] [pool-1-thread-7] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-10-25 01:38:53,839] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-10-25 01:38:54,525] [pool-1-thread-9] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-10-25 01:38:54,730] [pool-1-thread-3] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-10-25 01:38:54,995] [pool-1-thread-11] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-10-25 01:38:55,062] [pool-1-thread-6] Initializing /data/iplab/Actin.IPL: [testng] [2024-10-25 01:38:55,129] [pool-1-thread-8] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-10-25 01:38:55,394] [pool-1-thread-12] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-10-25 01:38:55,845] [pool-1-thread-5] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] [2024-10-25 01:38:56,258] [pool-1-thread-1] Initializing /data/iplab/3t3 Cell.IPL: [testng] [2024-10-25 01:38:56,357] [pool-1-thread-3] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-10-25 01:38:56,636] [pool-1-thread-11] Initializing /data/iplab/Color Image.IPL: [testng] [2024-10-25 01:38:56,682] [pool-1-thread-6] Initializing /data/iplab/16Bit XRay.IPL: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 51 seconds Finished: SUCCESS