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Started by upstream project "BIOFORMATS-test-repo" build number 234 originally caused by: Started by upstream project "Trigger" build number 259 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins15178150702522727104.sh + '[' targa = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36730_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:40:54,384 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:40:54,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 01:40:54,386 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:40:54,387 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:40:54,387 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:40:54,387 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:40:54,388 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:40:54,388 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:40:54,388 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:40:54,388 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:40:54,389 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:40:54,389 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:40:54,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:40:54,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:40:54,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:40:54,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:40:54,675 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:40:54,675 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:40:54,675 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:40:54,676 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:40:54,676 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 01:40:54,677 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 01:40:54,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 289 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-25 01:40:54,687] [main] java.version = 1.8.0_342 [testng] 01:40:54,691 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:40:54,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:54,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-25_01-40-54.log] [testng] 01:40:54,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-25 01:40:54,743] [main] testng.directory = /data [testng] [2024-10-25 01:40:54,744] [main] testng.configDirectory = /config [testng] [2024-10-25 01:40:54,757] [main] testng.multiplier = 1.0 [testng] [2024-10-25 01:40:54,757] [main] testng.in-memory = false [testng] [2024-10-25 01:40:54,757] [main] testng.allow-missing = false [testng] [2024-10-25 01:40:54,757] [main] user.language = en [testng] [2024-10-25 01:40:54,757] [main] user.country = ${user.country} [testng] [2024-10-25 01:40:54,758] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-25 01:40:55,438] [main] ---------------------------------------- [testng] [2024-10-25 01:40:55,439] [main] Total files: 21 [testng] [2024-10-25 01:40:55,439] [main] Scan time: 0.68 s (32 ms/file) [testng] [2024-10-25 01:40:55,439] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-25 01:40:57,756] [pool-1-thread-1] Initializing /data/samples/UCM8.TGA: [testng] 01:40:57,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:40:57,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:57,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-25_01-40-57.log] [testng] 01:40:57,757 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46ccbc40 - End of configuration. [testng] [2024-10-25 01:40:57,926] [pool-1-thread-12] Initializing /data/samples/XING_B24.TGA: [testng] 01:40:57,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:40:57,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:57,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-25_01-40-57.log] [testng] 01:40:57,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4221a259 - End of configuration. [testng] [2024-10-25 01:40:58,009] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA: [testng] 01:40:58,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:40:58,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:58,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-25_01-40-58.log] [testng] 01:40:58,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c891af9 - End of configuration. [testng] [2024-10-25 01:40:58,184] [pool-1-thread-10] Initializing /data/samples/XING_T16.TGA: [testng] 01:40:58,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:40:58,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:58,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-25_01-40-58.log] [testng] 01:40:58,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@762b378b - End of configuration. [testng] [2024-10-25 01:40:58,364] [pool-1-thread-9] Initializing /data/samples/FLAG_T16.TGA: [testng] 01:40:58,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:40:58,364 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:58,365 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-25_01-40-58.log] [testng] 01:40:58,365 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1961b558 - End of configuration. [testng] [2024-10-25 01:40:58,453] [pool-1-thread-8] Initializing /data/samples/FLAG_B24.TGA: [testng] 01:40:58,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:40:58,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:58,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-25_01-40-58.log] [testng] 01:40:58,455 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46320e52 - End of configuration. [testng] [2024-10-25 01:40:58,483] [pool-1-thread-7] Initializing /data/samples/CTC16.TGA: [testng] 01:40:58,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:40:58,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:58,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-25_01-40-58.log] [testng] 01:40:58,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58eef4dd - End of configuration. [testng] [2024-10-25 01:40:58,655] [pool-1-thread-6] Initializing /data/samples/XING_B16.TGA: [testng] 01:40:58,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:40:58,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:58,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-25_01-40-58.log] [testng] 01:40:58,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@559f3520 - End of configuration. [testng] [2024-10-25 01:40:58,828] [pool-1-thread-5] Initializing /data/samples/CCM8.TGA: [testng] 01:40:58,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:40:58,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:58,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-25_01-40-58.log] [testng] 01:40:58,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b5da5e7 - End of configuration. [testng] [2024-10-25 01:40:59,015] [pool-1-thread-4] Initializing /data/samples/FLAG_B32.TGA: [testng] 01:40:59,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:40:59,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:59,016 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-25_01-40-59.log] [testng] 01:40:59,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f2c7139 - End of configuration. [testng] [2024-10-25 01:40:59,142] [pool-1-thread-3] Initializing /data/samples/FLAG_B16.TGA: [testng] 01:40:59,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:40:59,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:59,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-25_01-40-59.log] [testng] 01:40:59,143 |-INFO in ch.qos.logback.core.sift.SiftProcessor@560badc - End of configuration. [testng] [2024-10-25 01:40:59,213] [pool-1-thread-2] Initializing /data/samples/XING_T24.TGA: [testng] 01:40:59,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:40:59,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:59,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-25_01-40-59.log] [testng] 01:40:59,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@353f44fd - End of configuration. [testng] [2024-10-25 01:41:02,147] [pool-1-thread-4] Initializing /data/samples/CTC24.TGA: [testng] [2024-10-25 01:41:02,285] [pool-1-thread-8] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-10-25 01:41:02,365] [pool-1-thread-7] Initializing /data/samples/CBW8.TGA: [testng] [2024-10-25 01:41:02,443] [pool-1-thread-5] Initializing /data/samples/XING_B32.TGA: [testng] [2024-10-25 01:41:02,581] [pool-1-thread-1] Initializing /data/samples/UTC24.TGA: [testng] [2024-10-25 01:41:02,699] [pool-1-thread-2] Initializing /data/samples/UTC32.TGA: [testng] [2024-10-25 01:41:02,791] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA: [testng] [2024-10-25 01:41:03,008] [pool-1-thread-6] Initializing /data/samples/XING_T32.TGA: [testng] [2024-10-25 01:41:03,095] [pool-1-thread-10] Initializing /data/samples/UTC16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 seconds Finished: SUCCESS