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Started by upstream project "BIOFORMATS-test-repo" build number 234 originally caused by: Started by upstream project "Trigger" build number 259 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins15482872465826296926.sh + '[' pict = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36743_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:46:05,038 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:46:05,039 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 01:46:05,039 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:46:05,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:46:05,041 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:46:05,041 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:46:05,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:46:05,041 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:46:05,042 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:46:05,043 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:46:05,043 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:46:05,043 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:46:05,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:46:05,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:46:05,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:46:05,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:46:05,323 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:46:05,323 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:46:05,323 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:46:05,324 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:46:05,324 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 01:46:05,325 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 01:46:05,325 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-25 01:46:05,334] [main] java.version = 1.8.0_342 [testng] 01:46:05,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:46:05,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:05,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-25_01-46-05.log] [testng] 01:46:05,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-25 01:46:05,384] [main] testng.directory = /data [testng] [2024-10-25 01:46:05,384] [main] testng.configDirectory = /config [testng] [2024-10-25 01:46:05,396] [main] testng.multiplier = 1.0 [testng] [2024-10-25 01:46:05,396] [main] testng.in-memory = false [testng] [2024-10-25 01:46:05,396] [main] testng.allow-missing = false [testng] [2024-10-25 01:46:05,396] [main] user.language = en [testng] [2024-10-25 01:46:05,396] [main] user.country = ${user.country} [testng] [2024-10-25 01:46:05,396] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-25 01:46:06,220] [main] ---------------------------------------- [testng] [2024-10-25 01:46:06,220] [main] Total files: 25 [testng] [2024-10-25 01:46:06,220] [main] Scan time: 0.824 s (32 ms/file) [testng] [2024-10-25 01:46:06,221] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-25 01:46:10,247] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 01:46:10,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:46:10,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:10,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-25_01-46-10.log] [testng] 01:46:10,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f019522 - End of configuration. [testng] [2024-10-25 01:46:10,393] [pool-1-thread-12] Initializing /data/jqd/mire32.pict: [testng] 01:46:10,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:46:10,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:10,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-25_01-46-10.log] [testng] 01:46:10,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35eccb58 - End of configuration. [testng] [2024-10-25 01:46:10,511] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 01:46:10,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:46:10,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:10,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-25_01-46-10.log] [testng] 01:46:10,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@709a9e28 - End of configuration. [testng] [2024-10-25 01:46:10,714] [pool-1-thread-10] Initializing /data/misc/planet2.pict: [testng] 01:46:10,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:46:10,714 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:10,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-25_01-46-10.log] [testng] 01:46:10,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e8f90dd - End of configuration. [testng] [2024-10-25 01:46:10,847] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] 01:46:10,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:46:10,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:10,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-25_01-46-10.log] [testng] 01:46:10,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f2aac69 - End of configuration. [testng] [2024-10-25 01:46:10,961] [pool-1-thread-8] Initializing /data/misc/planet.png: [testng] 01:46:10,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:46:10,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:10,962 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-25_01-46-10.log] [testng] 01:46:10,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57062cb - End of configuration. [testng] [2024-10-25 01:46:10,976] [pool-1-thread-7] Initializing /data/brian/images/VENUS.pct: [testng] 01:46:10,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:46:10,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:10,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-25_01-46-10.log] [testng] 01:46:10,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56db8e76 - End of configuration. [testng] [2024-10-25 01:46:11,095] [pool-1-thread-6] Initializing /data/brian/images/RED.PCT: [testng] 01:46:11,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:46:11,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:11,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-25_01-46-11.log] [testng] 01:46:11,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59a3ef3d - End of configuration. [testng] [2024-10-25 01:46:11,197] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32.pct: [testng] 01:46:11,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:46:11,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:11,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-25_01-46-11.log] [testng] 01:46:11,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@381ebf6b - End of configuration. [testng] [2024-10-25 01:46:11,298] [pool-1-thread-4] Initializing /data/misc/swlogo.pict: [testng] 01:46:11,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:46:11,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:11,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-25_01-46-11.log] [testng] 01:46:11,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7696418d - End of configuration. [testng] [2024-10-25 01:46:11,399] [pool-1-thread-3] Initializing /data/jqd/32bit.pict: [testng] 01:46:11,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:46:11,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:11,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-25_01-46-11.log] [testng] 01:46:11,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e9edab5 - End of configuration. [testng] [2024-10-25 01:46:11,519] [pool-1-thread-2] Initializing /data/wayne/PotatoMeristem.pict: [testng] 01:46:11,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:46:11,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:11,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-25_01-46-11.log] [testng] 01:46:11,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@684d5052 - End of configuration. [testng] [2024-10-25 01:46:13,286] [pool-1-thread-8] Initializing /data/brian/images/BLK.PCT: [testng] [2024-10-25 01:46:13,846] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-10-25 01:46:13,968] [pool-1-thread-4] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-10-25 01:46:14,089] [pool-1-thread-11] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-10-25 01:46:14,192] [pool-1-thread-6] Initializing /data/brian/images/WHT.PCT: [testng] [2024-10-25 01:46:14,308] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-10-25 01:46:14,543] [pool-1-thread-9] Initializing /data/brian/images/YEL.PCT: [testng] [2024-10-25 01:46:14,678] [pool-1-thread-10] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-10-25 01:46:14,817] [pool-1-thread-3] Initializing /data/brian/images/BLU.PCT: [testng] [2024-10-25 01:46:14,935] [pool-1-thread-1] Initializing /data/misc/planet.pict: [testng] [2024-10-25 01:46:15,057] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-10-25 01:46:15,401] [pool-1-thread-2] Initializing /data/jqd/mireSixteen.pict: [testng] [2024-10-25 01:46:16,484] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 15 seconds Finished: SUCCESS