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Started by upstream project "BIOFORMATS-test-repo" build number 234 originally caused by: Started by upstream project "Trigger" build number 259 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins7134886632077039839.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36787_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:03:47,923 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:03:47,925 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 03:03:47,925 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:03:47,926 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:03:47,926 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:03:47,926 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:03:47,927 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:03:47,927 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:03:47,927 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:03:47,928 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:03:47,928 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:03:47,928 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:03:48,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:03:48,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:03:48,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:03:48,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:03:48,240 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:03:48,241 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:03:48,241 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:03:48,241 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:03:48,241 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 03:03:48,242 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 03:03:48,243 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 316 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-25 03:03:48,254] [main] java.version = 1.8.0_342 [testng] 03:03:48,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:03:48,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:03:48,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-25_03-03-48.log] [testng] 03:03:48,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-25 03:03:48,316] [main] testng.directory = /data [testng] [2024-10-25 03:03:48,317] [main] testng.configDirectory = /config [testng] [2024-10-25 03:03:48,331] [main] testng.multiplier = 1.0 [testng] [2024-10-25 03:03:48,332] [main] testng.in-memory = false [testng] [2024-10-25 03:03:48,332] [main] testng.allow-missing = false [testng] [2024-10-25 03:03:48,332] [main] user.language = en [testng] [2024-10-25 03:03:48,332] [main] user.country = ${user.country} [testng] [2024-10-25 03:03:48,332] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-25 03:03:50,140] [main] ---------------------------------------- [testng] [2024-10-25 03:03:50,140] [main] Total files: 19 [testng] [2024-10-25 03:03:50,140] [main] Scan time: 1.808 s (95 ms/file) [testng] [2024-10-25 03:03:50,140] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-25 03:04:01,205] [pool-1-thread-1] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] 03:04:01,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:04:01,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:04:01,206 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-25_03-04-01.log] [testng] 03:04:01,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@470cc146 - End of configuration. [testng] [2024-10-25 03:04:01,615] [pool-1-thread-12] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 03:04:01,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:04:01,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:04:01,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-25_03-04-01.log] [testng] 03:04:01,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d4054c9 - End of configuration. [testng] [2024-10-25 03:04:02,069] [pool-1-thread-11] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 03:04:02,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:04:02,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:04:02,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-25_03-04-02.log] [testng] 03:04:02,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13de2764 - End of configuration. [testng] [2024-10-25 03:04:02,521] [pool-1-thread-10] Initializing /data/samples/400R PICT0003.MRW: [testng] 03:04:02,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:04:02,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:04:02,522 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-25_03-04-02.log] [testng] 03:04:02,523 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43c32ecb - End of configuration. [testng] [2024-10-25 03:04:03,214] [pool-1-thread-9] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] 03:04:03,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:04:03,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:04:03,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-25_03-04-03.log] [testng] 03:04:03,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a5e011 - End of configuration. [testng] [2024-10-25 03:04:03,705] [pool-1-thread-8] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] 03:04:03,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:04:03,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:04:03,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-25_03-04-03.log] [testng] 03:04:03,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56db8e76 - End of configuration. [testng] [2024-10-25 03:04:04,210] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] 03:04:04,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:04:04,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:04:04,211 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-25_03-04-04.log] [testng] 03:04:04,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ca16a6d - End of configuration. [testng] [2024-10-25 03:04:04,714] [pool-1-thread-6] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] 03:04:04,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:04:04,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:04:04,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-25_03-04-04.log] [testng] 03:04:04,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@381ebf6b - End of configuration. [testng] [2024-10-25 03:04:05,175] [pool-1-thread-5] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 03:04:05,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:04:05,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:04:05,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-25_03-04-05.log] [testng] 03:04:05,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7696418d - End of configuration. [testng] [2024-10-25 03:04:05,668] [pool-1-thread-4] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 03:04:05,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:04:05,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:04:05,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-25_03-04-05.log] [testng] 03:04:05,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e9edab5 - End of configuration. [testng] [2024-10-25 03:04:06,240] [pool-1-thread-3] Initializing /data/samples/100R PICT0001.MRW: [testng] 03:04:06,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:04:06,241 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:04:06,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-25_03-04-06.log] [testng] 03:04:06,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f758c0b - End of configuration. [testng] [2024-10-25 03:04:06,656] [pool-1-thread-2] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 03:04:06,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:04:06,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:04:06,657 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-25_03-04-06.log] [testng] 03:04:06,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@250dad73 - End of configuration. [testng] [2024-10-25 03:04:17,635] [pool-1-thread-10] Initializing /data/samples/1600R PICT0005.MRW: [testng] [2024-10-25 03:04:18,070] [pool-1-thread-11] Initializing /data/samples/800R PICT0010.MRW: [testng] [2024-10-25 03:04:18,544] [pool-1-thread-5] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] [2024-10-25 03:04:19,049] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] [2024-10-25 03:04:19,567] [pool-1-thread-2] Initializing /data/samples/200R PICT0002.MRW: [testng] [2024-10-25 03:04:20,111] [pool-1-thread-4] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] [2024-10-25 03:04:20,606] [pool-1-thread-9] Initializing /data/samples/3200R PICT0006.MRW: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 45 seconds Finished: SUCCESS