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Started by upstream project "BIOFORMATS-test-repo" build number 234 originally caused by: Started by upstream project "Trigger" build number 259 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins5841051124698799398.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36821_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 03:50:11,309 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:50:11,311 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 03:50:11,311 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:50:11,312 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:50:11,312 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:50:11,312 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:50:11,312 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:50:11,312 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:50:11,313 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:50:11,313 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:50:11,313 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:50:11,313 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:50:11,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:50:11,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:50:11,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:50:11,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:50:11,562 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:50:11,562 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:50:11,562 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:50:11,563 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:50:11,563 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 03:50:11,563 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 03:50:11,564 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 251 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-25 03:50:11,573] [main] java.version = 1.8.0_342 [testng] 03:50:11,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:50:11,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:11,619 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-25_03-50-11.log] [testng] 03:50:11,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-25 03:50:11,622] [main] testng.directory = /data [testng] [2024-10-25 03:50:11,623] [main] testng.configDirectory = /config [testng] [2024-10-25 03:50:11,634] [main] testng.multiplier = 1.0 [testng] [2024-10-25 03:50:11,635] [main] testng.in-memory = false [testng] [2024-10-25 03:50:11,635] [main] testng.allow-missing = false [testng] [2024-10-25 03:50:11,635] [main] user.language = en [testng] [2024-10-25 03:50:11,635] [main] user.country = ${user.country} [testng] [2024-10-25 03:50:11,635] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-25 03:52:40,403] [main] ---------------------------------------- [testng] [2024-10-25 03:52:40,403] [main] Total files: 15735 [testng] [2024-10-25 03:52:40,403] [main] Scan time: 148.768 s (9 ms/file) [testng] [2024-10-25 03:52:40,404] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-25 03:55:53,574] [pool-1-thread-1] Initializing /data/converted/converted/mri-stack.tif: [testng] 03:55:53,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:55:53,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:55:53,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-25_03-55-53.log] [testng] 03:55:53,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@539ae833 - End of configuration. [testng] [2024-10-25 03:55:54,715] [pool-1-thread-12] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] 03:55:54,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:55:54,715 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:55:54,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-25_03-55-54.log] [testng] 03:55:54,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7427a587 - End of configuration. [testng] [2024-10-25 03:55:55,941] [pool-1-thread-11] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] 03:55:55,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:55:55,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:55:55,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-25_03-55-55.log] [testng] 03:55:55,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@437a11bf - End of configuration. [testng] [2024-10-25 03:55:57,298] [pool-1-thread-10] Initializing /data/converted/kelsey/432x342BW.tif: [testng] 03:55:57,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:55:57,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:55:57,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-25_03-55-57.log] [testng] 03:55:57,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d300087 - End of configuration. [testng] [2024-10-25 03:55:58,315] [pool-1-thread-9] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] 03:55:58,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:55:58,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:55:58,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-25_03-55-58.log] [testng] 03:55:58,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d70500d - End of configuration. [testng] [2024-10-25 03:55:59,857] [pool-1-thread-8] Initializing /data/converted/converted/2chz.tif: [testng] 03:55:59,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:55:59,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:55:59,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-25_03-55-59.log] [testng] 03:55:59,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6760c6c5 - End of configuration. [testng] [2024-10-25 03:56:01,558] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] 03:56:01,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:56:01,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:56:01,559 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-25_03-56-01.log] [testng] 03:56:01,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9968d27 - End of configuration. [testng] [2024-10-25 03:56:03,173] [pool-1-thread-6] Initializing /data/converted/dietmar/138.tif: [testng] 03:56:03,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:56:03,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:56:03,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-25_03-56-03.log] [testng] 03:56:03,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b98bef3 - End of configuration. [testng] [2024-10-25 03:56:04,733] [pool-1-thread-5] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 03:56:04,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:56:04,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:56:04,734 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-25_03-56-04.log] [testng] 03:56:04,735 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cb97d36 - End of configuration. [testng] [2024-10-25 03:56:06,504] [pool-1-thread-4] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] 03:56:06,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:56:06,504 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:56:06,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-25_03-56-06.log] [testng] 03:56:06,505 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a66533a - End of configuration. [testng] [2024-10-25 03:56:07,527] [pool-1-thread-3] Initializing /data/converted/kelsey/650x514BW.tif: [testng] 03:56:07,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:56:07,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:56:07,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-25_03-56-07.log] [testng] 03:56:07,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4209d511 - End of configuration. [testng] [2024-10-25 03:56:08,531] [pool-1-thread-2] Initializing /data/converted/converted/damian.tif: [testng] 03:56:08,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:56:08,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:56:08,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-25_03-56-08.log] [testng] 03:56:08,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5662e7e9 - End of configuration. [testng] [2024-10-25 03:56:31,211] [pool-1-thread-1] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-10-25 03:56:32,617] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-10-25 03:56:34,111] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2024-10-25 03:56:35,918] [pool-1-thread-3] Initializing /data/scott/Slide133-04.tif: [testng] [2024-10-25 03:57:00,408] [pool-1-thread-1] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-10-25 03:57:05,801] [pool-1-thread-3] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-10-25 03:57:25,441] [pool-1-thread-12] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-10-25 03:57:36,603] [pool-1-thread-3] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-10-25 03:57:38,917] [pool-1-thread-1] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-10-25 03:59:08,492] [pool-1-thread-8] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-10-25 03:59:36,695] [pool-1-thread-11] Initializing /data/scott/Slide133-11.tif: [testng] [2024-10-25 03:59:42,536] [pool-1-thread-8] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-10-25 03:59:44,828] [pool-1-thread-4] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-10-25 04:00:10,138] [pool-1-thread-11] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-10-25 04:00:17,564] [pool-1-thread-8] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-10-25 04:00:33,646] [pool-1-thread-11] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-10-25 04:00:35,392] [pool-1-thread-4] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-10-25 04:00:47,721] [pool-1-thread-2] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-10-25 04:01:02,951] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-10-25 04:02:23,215] [pool-1-thread-9] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-10-25 04:02:41,507] [pool-1-thread-9] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-10-25 04:02:48,882] [pool-1-thread-7] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-10-25 04:03:00,306] [pool-1-thread-9] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-10-25 04:03:10,711] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-10-25 04:03:15,550] [pool-1-thread-7] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-10-25 04:03:59,084] [pool-1-thread-10] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-10-25 04:05:02,181] [pool-1-thread-8] Initializing /data/othmar/mozaic.tif: [testng] [2024-10-25 04:05:52,047] [pool-1-thread-9] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-10-25 04:06:44,424] [pool-1-thread-1] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-10-25 04:07:04,630] [pool-1-thread-11] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-10-25 04:08:07,407] [pool-1-thread-8] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-10-25 04:08:21,273] [pool-1-thread-4] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-10-25 04:08:34,722] [pool-1-thread-8] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-10-25 04:08:53,841] [pool-1-thread-8] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-10-25 04:09:28,356] [pool-1-thread-6] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-10-25 04:09:53,819] [pool-1-thread-11] Initializing /data/scott/Slide133-01.tif: [testng] [2024-10-25 04:10:11,013] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-10-25 04:10:16,027] [pool-1-thread-11] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-10-25 04:10:19,603] [pool-1-thread-6] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-10-25 04:10:32,652] [pool-1-thread-11] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2024-10-25 04:13:21,676] [pool-1-thread-11] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-10-25 04:13:45,424] [pool-1-thread-11] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-10-25 04:15:15,732] [pool-1-thread-7] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-10-25 04:15:32,030] [pool-1-thread-4] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-10-25 04:15:38,505] [pool-1-thread-10] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-10-25 04:15:56,942] [pool-1-thread-10] Initializing /data/converted/dietmar/137.tif: [testng] [2024-10-25 04:15:58,191] [pool-1-thread-4] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-10-25 04:16:03,392] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-10-25 04:17:33,101] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-10-25 04:19:31,379] [pool-1-thread-7] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] [2024-10-25 04:19:41,510] [pool-1-thread-9] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-10-25 04:20:49,908] [pool-1-thread-8] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-10-25 04:21:28,246] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2024-10-25 04:21:40,297] [pool-1-thread-5] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-10-25 04:21:46,979] [pool-1-thread-9] Initializing /data/converted/sebastien/test.tif: [testng] [2024-10-25 04:23:17,243] [pool-1-thread-1] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-10-25 04:24:04,823] [pool-1-thread-5] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-10-25 04:24:49,851] [pool-1-thread-3] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-10-25 04:24:55,651] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-10-25 04:26:46,325] [pool-1-thread-3] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-10-25 04:27:35,971] [pool-1-thread-2] Initializing /data/converted/michel/c.tif: [testng] [2024-10-25 04:28:00,154] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2024-10-25 04:28:09,546] [pool-1-thread-2] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-10-25 04:28:36,789] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-10-25 04:28:39,703] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-10-25 04:28:58,521] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-10-25 04:29:10,500] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-10-25 04:29:13,915] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-10-25 04:29:59,010] [pool-1-thread-9] Initializing /data/converted/michel/e.tif: [testng] [2024-10-25 04:30:43,832] [pool-1-thread-5] Initializing /data/converted/nicolas/image.tif: [testng] [2024-10-25 04:30:52,083] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-10-25 04:31:07,006] [pool-1-thread-5] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-10-25 04:31:42,580] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-10-25 04:31:49,811] [pool-1-thread-1] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-10-25 04:33:50,732] [pool-1-thread-1] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-10-25 04:34:15,989] [pool-1-thread-1] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-10-25 04:35:00,417] [pool-1-thread-1] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-10-25 04:35:06,999] [pool-1-thread-11] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-10-25 04:35:15,765] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-10-25 04:35:26,511] [pool-1-thread-1] Initializing /data/converted/michel/a.tif: [testng] [2024-10-25 04:35:35,183] [pool-1-thread-3] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-10-25 04:35:42,240] [pool-1-thread-11] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] [2024-10-25 04:35:46,665] [pool-1-thread-1] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-10-25 04:35:55,318] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-10-25 04:35:59,942] [pool-1-thread-8] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-10-25 04:36:03,979] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] [2024-10-25 04:36:06,950] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-10-25 04:36:08,550] [pool-1-thread-1] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-10-25 04:36:26,885] [pool-1-thread-8] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-10-25 04:36:50,896] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-10-25 04:36:55,485] [pool-1-thread-9] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-10-25 04:37:09,772] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-10-25 04:37:39,727] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-10-25 04:38:25,782] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-10-25 04:41:23,403] [pool-1-thread-9] Initializing /data/converted/michel/b.tif: [testng] [2024-10-25 04:41:33,787] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-10-25 04:41:52,435] [pool-1-thread-9] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-10-25 04:42:12,671] [pool-1-thread-7] Initializing /data/converted/michel/d.tif: [testng] [2024-10-25 04:42:23,452] [pool-1-thread-2] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-10-25 04:42:29,964] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-10-25 04:42:36,372] [pool-1-thread-7] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-10-25 04:42:44,120] [pool-1-thread-4] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-10-25 04:42:47,034] [pool-1-thread-2] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-10-25 04:42:53,225] [pool-1-thread-4] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-10-25 04:43:02,432] [pool-1-thread-1] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-10-25 04:43:07,101] [pool-1-thread-8] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-10-25 04:43:16,018] [pool-1-thread-7] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-10-25 04:43:33,081] [pool-1-thread-10] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-10-25 04:43:34,520] [pool-1-thread-11] Initializing /data/scott/Slide133-08.tif: [testng] [2024-10-25 04:43:54,484] [pool-1-thread-10] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-10-25 04:44:01,692] [pool-1-thread-11] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2024-10-25 04:44:30,017] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-10-25 04:44:31,995] [pool-1-thread-11] Initializing /data/converted/lior/live+cf5b.tif: [testng] 05:13:27,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:13:27,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:13:27,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-25_05-13-27.log] [testng] 05:13:27,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e84be9b - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 83 minutes 20 seconds Finished: SUCCESS