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Started by upstream project "BIOFORMATS-test-repo" build number 234 originally caused by: Started by upstream project "Trigger" build number 259 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins14118473407901856256.sh + '[' psd = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36825_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:06:03,915 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:06:03,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 04:06:03,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:06:03,918 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:06:03,918 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:06:03,918 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:06:03,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:06:03,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:06:03,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:06:03,919 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:06:03,920 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:06:03,920 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:06:04,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:06:04,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:06:04,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:06:04,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:06:04,190 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:06:04,190 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:06:04,190 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:06:04,191 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:06:04,191 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 04:06:04,192 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 04:06:04,192 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 273 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-25 04:06:04,202] [main] java.version = 1.8.0_342 [testng] 04:06:04,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:06:04,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:04,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-25_04-06-04.log] [testng] 04:06:04,259 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-25 04:06:04,261] [main] testng.directory = /data [testng] [2024-10-25 04:06:04,261] [main] testng.configDirectory = /config [testng] [2024-10-25 04:06:04,273] [main] testng.multiplier = 1.0 [testng] [2024-10-25 04:06:04,273] [main] testng.in-memory = false [testng] [2024-10-25 04:06:04,274] [main] testng.allow-missing = false [testng] [2024-10-25 04:06:04,274] [main] user.language = en [testng] [2024-10-25 04:06:04,274] [main] user.country = ${user.country} [testng] [2024-10-25 04:06:04,274] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-25 04:06:05,535] [main] ---------------------------------------- [testng] [2024-10-25 04:06:05,535] [main] Total files: 18 [testng] [2024-10-25 04:06:05,536] [main] Scan time: 1.261 s (70 ms/file) [testng] [2024-10-25 04:06:05,536] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-25 04:06:13,162] [pool-1-thread-1] Initializing /data/ascb/423.psd: [testng] 04:06:13,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:06:13,163 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:13,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-25_04-06-13.log] [testng] 04:06:13,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33fcbd39 - End of configuration. [testng] [2024-10-25 04:06:13,509] [pool-1-thread-12] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 04:06:13,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:06:13,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:13,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-25_04-06-13.log] [testng] 04:06:13,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e1e18a8 - End of configuration. [testng] [2024-10-25 04:06:13,920] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 04:06:13,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:06:13,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:13,922 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-25_04-06-13.log] [testng] 04:06:13,922 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21305b4e - End of configuration. [testng] [2024-10-25 04:06:14,325] [pool-1-thread-10] Initializing /data/big-images/8kx8k.psd: [testng] 04:06:14,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:06:14,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:14,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-25_04-06-14.log] [testng] 04:06:14,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d155c87 - End of configuration. [testng] [2024-10-25 04:06:14,655] [pool-1-thread-9] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 04:06:14,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:06:14,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:14,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-25_04-06-14.log] [testng] 04:06:14,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29e10f29 - End of configuration. [testng] [2024-10-25 04:06:14,966] [pool-1-thread-8] Initializing /data/misc/glossy_buttons.psd: [testng] 04:06:14,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:06:14,967 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:14,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-25_04-06-14.log] [testng] 04:06:14,968 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e8f0603 - End of configuration. [testng] [2024-10-25 04:06:15,316] [pool-1-thread-7] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 04:06:15,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:06:15,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:15,317 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-25_04-06-15.log] [testng] 04:06:15,318 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6283fd2c - End of configuration. [testng] [2024-10-25 04:06:15,650] [pool-1-thread-6] Initializing /data/simon/colour_separated_image.psd: [testng] 04:06:15,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:06:15,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:15,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-25_04-06-15.log] [testng] 04:06:15,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a29a7b7 - End of configuration. [testng] [2024-10-25 04:06:16,049] [pool-1-thread-5] Initializing /data/misc/smilie.psd: [testng] 04:06:16,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:06:16,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:16,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-25_04-06-16.log] [testng] 04:06:16,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@577fc55a - End of configuration. [testng] [2024-10-25 04:06:16,371] [pool-1-thread-4] Initializing /data/misc/venus_composite_8bit.psd: [testng] 04:06:16,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:06:16,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:16,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-25_04-06-16.log] [testng] 04:06:16,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58fc4a38 - End of configuration. [testng] [2024-10-25 04:06:16,703] [pool-1-thread-3] Initializing /data/ascb/607x.psd: [testng] 04:06:16,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:06:16,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:16,704 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-25_04-06-16.log] [testng] 04:06:16,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1caccdda - End of configuration. [testng] [2024-10-25 04:06:17,636] [pool-1-thread-2] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 04:06:17,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:06:17,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:17,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-25_04-06-17.log] [testng] 04:06:17,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12ca35b8 - End of configuration. [testng] [2024-10-25 04:06:23,393] [pool-1-thread-6] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] [2024-10-25 04:06:23,763] [pool-1-thread-8] Initializing /data/misc/venus_composite.psd: [testng] [2024-10-25 04:06:24,068] [pool-1-thread-7] Initializing /data/misc/glossy_orbs.psd: [testng] [2024-10-25 04:06:24,393] [pool-1-thread-5] Initializing /data/cris/house.tif: [testng] [2024-10-25 04:06:25,478] [pool-1-thread-12] Initializing /data/qa-4117/caspase gel-1.psd: [testng] [2024-10-25 04:06:25,796] [pool-1-thread-11] Initializing /data/misc/vig_drawing_1.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 36 seconds Finished: SUCCESS