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Started by upstream project "BIOFORMATS-test-repo" build number 234 originally caused by: Started by upstream project "Trigger" build number 259 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins11490840964555062280.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36847_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:53:23,461 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:53:23,463 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 04:53:23,463 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:53:23,464 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:53:23,464 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:53:23,464 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:53:23,465 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:53:23,465 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:53:23,465 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:53:23,465 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:53:23,465 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:53:23,465 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:53:23,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:53:23,685 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:53:23,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:53:23,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:53:23,719 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:53:23,720 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:53:23,720 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:53:23,720 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:53:23,720 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 04:53:23,721 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 04:53:23,721 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 256 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-25 04:53:23,731] [main] java.version = 1.8.0_342 [testng] 04:53:23,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:53:23,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:53:23,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-25_04-53-23.log] [testng] 04:53:23,779 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-25 04:53:23,781] [main] testng.directory = /data [testng] [2024-10-25 04:53:23,781] [main] testng.configDirectory = /config [testng] [2024-10-25 04:53:23,793] [main] testng.multiplier = 1.0 [testng] [2024-10-25 04:53:23,793] [main] testng.in-memory = false [testng] [2024-10-25 04:53:23,793] [main] testng.allow-missing = false [testng] [2024-10-25 04:53:23,793] [main] user.language = en [testng] [2024-10-25 04:53:23,793] [main] user.country = ${user.country} [testng] [2024-10-25 04:53:23,793] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-25 04:53:26,415] [main] ---------------------------------------- [testng] [2024-10-25 04:53:26,415] [main] Total files: 17 [testng] [2024-10-25 04:53:26,415] [main] Scan time: 2.622 s (154 ms/file) [testng] [2024-10-25 04:53:26,415] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-25 04:53:28,747] [pool-1-thread-1] Initializing /data/christopher/Color48 Copy.ipm: [testng] 04:53:28,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:53:28,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:53:28,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-25_04-53-28.log] [testng] 04:53:28,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@755dcfcd - End of configuration. [testng] [2024-10-25 04:53:28,845] [pool-1-thread-12] Initializing /data/samples/16bit 320x256x1.ipm: [testng] 04:53:28,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:53:28,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:53:28,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-25_04-53-28.log] [testng] 04:53:28,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@214e0ab1 - End of configuration. [testng] [2024-10-25 04:53:28,939] [pool-1-thread-11] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] 04:53:28,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:53:28,939 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:53:28,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-25_04-53-28.log] [testng] 04:53:28,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79e7f209 - End of configuration. [testng] [2024-10-25 04:53:29,046] [pool-1-thread-10] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] 04:53:29,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:53:29,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:53:29,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-25_04-53-29.log] [testng] 04:53:29,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5193c950 - End of configuration. [testng] [2024-10-25 04:53:29,130] [pool-1-thread-9] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 04:53:29,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:53:29,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:53:29,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-25_04-53-29.log] [testng] 04:53:29,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15ed8700 - End of configuration. [testng] [2024-10-25 04:53:29,221] [pool-1-thread-8] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 04:53:29,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:53:29,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:53:29,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-25_04-53-29.log] [testng] 04:53:29,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ba73ada - End of configuration. [testng] [2024-10-25 04:53:29,307] [pool-1-thread-7] Initializing /data/samples/24bit 300x200x3.ipm: [testng] 04:53:29,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:53:29,307 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:53:29,308 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-25_04-53-29.log] [testng] 04:53:29,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c17ee9b - End of configuration. [testng] [2024-10-25 04:53:29,400] [pool-1-thread-6] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 04:53:29,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:53:29,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:53:29,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-25_04-53-29.log] [testng] 04:53:29,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ecf3d5a - End of configuration. [testng] [2024-10-25 04:53:29,484] [pool-1-thread-5] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 04:53:29,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:53:29,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:53:29,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-25_04-53-29.log] [testng] 04:53:29,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c7e5916 - End of configuration. [testng] [2024-10-25 04:53:29,585] [pool-1-thread-4] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 04:53:29,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:53:29,585 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:53:29,586 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-25_04-53-29.log] [testng] 04:53:29,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32e119aa - End of configuration. [testng] [2024-10-25 04:53:29,682] [pool-1-thread-3] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 04:53:29,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:53:29,682 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:53:29,683 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-25_04-53-29.log] [testng] 04:53:29,683 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d02a39a - End of configuration. [testng] [2024-10-25 04:53:29,787] [pool-1-thread-2] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] 04:53:29,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:53:29,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:53:29,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-25_04-53-29.log] [testng] 04:53:29,789 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e4c7e67 - End of configuration. [testng] [2024-10-25 04:53:32,837] [pool-1-thread-12] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] [2024-10-25 04:53:32,973] [pool-1-thread-7] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] [2024-10-25 04:53:33,264] [pool-1-thread-2] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] [2024-10-25 04:53:33,360] [pool-1-thread-5] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] [2024-10-25 04:53:33,462] [pool-1-thread-11] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 seconds Finished: SUCCESS