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Started by upstream project "BIOFORMATS-test-repo" build number 235 originally caused by: Started by upstream project "Trigger" build number 260 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins17679475828990034840.sh + '[' avi = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_36942_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:54:02,615 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:54:02,616 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 02:54:02,616 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:54:02,617 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:54:02,618 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:54:02,618 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:54:02,619 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:54:02,619 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:54:02,619 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:54:02,620 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:54:02,620 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:54:02,620 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:54:02,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:54:02,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:54:02,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:54:02,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:54:02,818 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:54:02,818 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:54:02,818 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:54:02,818 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:54:02,818 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 02:54:02,819 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 02:54:02,819 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-26 02:54:02,828] [main] java.version = 11.0.16 [testng] 02:54:02,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:54:02,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:02,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-26_02-54-02.log] [testng] 02:54:02,876 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-26 02:54:02,878] [main] testng.directory = /data [testng] [2024-10-26 02:54:02,879] [main] testng.configDirectory = /config [testng] [2024-10-26 02:54:02,889] [main] testng.multiplier = 1.0 [testng] [2024-10-26 02:54:02,890] [main] testng.in-memory = false [testng] [2024-10-26 02:54:02,890] [main] testng.allow-missing = false [testng] [2024-10-26 02:54:02,890] [main] user.language = en [testng] [2024-10-26 02:54:02,891] [main] user.country = ${user.country} [testng] [2024-10-26 02:54:02,891] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-26 02:54:06,942] [main] ---------------------------------------- [testng] [2024-10-26 02:54:06,942] [main] Total files: 40 [testng] [2024-10-26 02:54:06,942] [main] Scan time: 4.051 s (101 ms/file) [testng] [2024-10-26 02:54:06,942] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-26 02:54:54,093] [pool-1-thread-1] Initializing /data/curtis/mri-stack-bf.avi: [testng] 02:54:54,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:54:54,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:54,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-26_02-54-54.log] [testng] 02:54:54,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d585d2d - End of configuration. [testng] [2024-10-26 02:54:54,296] [pool-1-thread-12] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] 02:54:54,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:54:54,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:54,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-26_02-54-54.log] [testng] 02:54:54,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@401613cc - End of configuration. [testng] [2024-10-26 02:54:54,481] [pool-1-thread-11] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] 02:54:54,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:54:54,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:54,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-26_02-54-54.log] [testng] 02:54:54,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b8ed3e0 - End of configuration. [testng] [2024-10-26 02:54:54,672] [pool-1-thread-10] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] 02:54:54,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:54:54,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:54,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-26_02-54-54.log] [testng] 02:54:54,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f222ced - End of configuration. [testng] [2024-10-26 02:54:54,877] [pool-1-thread-9] Initializing /data/simon/24_bit_problem.avi: [testng] 02:54:54,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:54:54,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:54,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-26_02-54-54.log] [testng] 02:54:54,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73c6f347 - End of configuration. [testng] [2024-10-26 02:54:55,120] [pool-1-thread-8] Initializing /data/qa-11011/M-flow10001.avi: [testng] 02:54:55,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:54:55,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:55,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-26_02-54-55.log] [testng] 02:54:55,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44269973 - End of configuration. [testng] [2024-10-26 02:54:55,435] [pool-1-thread-7] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 02:54:55,435 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:54:55,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:55,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-26_02-54-55.log] [testng] 02:54:55,437 |-INFO in ch.qos.logback.core.sift.SiftProcessor@690b4f85 - End of configuration. [testng] [2024-10-26 02:54:56,821] [pool-1-thread-6] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] 02:54:56,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:54:56,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:56,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-26_02-54-56.log] [testng] 02:54:56,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5151e102 - End of configuration. [testng] [2024-10-26 02:54:58,708] [pool-1-thread-5] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] 02:54:58,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:54:58,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:54:58,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-26_02-54-58.log] [testng] 02:54:58,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b56f1ea - End of configuration. [testng] [2024-10-26 02:55:00,741] [pool-1-thread-4] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] 02:55:00,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:55:00,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:55:00,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-26_02-55-00.log] [testng] 02:55:00,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@120bce1f - End of configuration. [testng] [2024-10-26 02:55:02,549] [pool-1-thread-3] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] 02:55:02,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:55:02,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:55:02,550 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-26_02-55-02.log] [testng] 02:55:02,551 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43f54a69 - End of configuration. [testng] [2024-10-26 02:55:04,580] [pool-1-thread-2] Initializing /data/qa-7450/MVI_3610.AVI: [testng] 02:55:04,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:55:04,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:55:04,581 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-26_02-55-04.log] [testng] 02:55:04,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f831d39 - End of configuration. [testng] [2024-10-26 02:55:23,629] [pool-1-thread-12] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2024-10-26 02:55:25,324] [pool-1-thread-7] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2024-10-26 02:55:27,277] [pool-1-thread-6] Initializing /data/kurt/63x_6um.avi: [testng] [2024-10-26 02:55:28,922] [pool-1-thread-9] Initializing /data/chris/APZ04_009.avi: [testng] [2024-10-26 02:55:31,697] [pool-1-thread-5] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2024-10-26 02:55:34,476] [pool-1-thread-3] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2024-10-26 02:55:36,840] [pool-1-thread-1] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2024-10-26 02:55:38,246] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2024-10-26 02:55:39,738] [pool-1-thread-10] Initializing /data/jae/20xD_5minfor14h.avi: [testng] [2024-10-26 02:55:41,488] [pool-1-thread-8] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2024-10-26 02:55:42,206] [pool-1-thread-4] Initializing /data/william/worm.avi: [testng] [2024-10-26 02:55:42,439] [pool-1-thread-2] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [2024-10-26 02:55:46,883] [pool-1-thread-4] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] [2024-10-26 02:55:47,253] [pool-1-thread-1] Initializing /data/kurt/40x_6um_2.avi: [testng] [2024-10-26 02:55:47,796] [pool-1-thread-11] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2024-10-26 02:55:48,239] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] [2024-10-26 02:55:48,601] [pool-1-thread-7] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] [2024-10-26 02:55:48,851] [pool-1-thread-2] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] [2024-10-26 02:55:49,117] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2024-10-26 02:55:49,332] [pool-1-thread-6] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2024-10-26 02:55:49,527] [pool-1-thread-12] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2024-10-26 02:55:50,912] [pool-1-thread-10] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2024-10-26 02:55:52,343] [pool-1-thread-3] Initializing /data/ascb/TIRF.avi: [testng] [2024-10-26 02:55:53,931] [pool-1-thread-10] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] [2024-10-26 02:55:54,288] [pool-1-thread-2] Initializing /data/kurt/40x_6um.avi: [testng] [2024-10-26 02:55:54,598] [pool-1-thread-4] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 3 seconds Finished: SUCCESS