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Started by upstream project "BIOFORMATS-test-repo" build number 236 originally caused by: Started by upstream project "Trigger" build number 261 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins5574722373966531996.sh + '[' lim = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37035_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:23:18,938 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:23:18,939 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:23:18,939 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:18,940 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:23:18,941 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:23:18,941 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:23:18,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:23:18,941 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:18,942 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:23:18,942 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:23:18,943 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:23:18,943 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:23:19,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:23:19,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:23:19,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:23:19,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:23:19,135 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:23:19,135 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:23:19,135 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:23:19,136 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:23:19,136 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:23:19,136 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:23:19,137 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-27 01:23:19,146] [main] java.version = 17.0.2 [testng] 01:23:19,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:23:19,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:19,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-27_01-23-19.log] [testng] 01:23:19,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-27 01:23:19,193] [main] testng.directory = /data [testng] [2024-10-27 01:23:19,193] [main] testng.configDirectory = /config [testng] [2024-10-27 01:23:19,201] [main] testng.multiplier = 1.0 [testng] [2024-10-27 01:23:19,202] [main] testng.in-memory = false [testng] [2024-10-27 01:23:19,202] [main] testng.allow-missing = false [testng] [2024-10-27 01:23:19,202] [main] user.language = en [testng] [2024-10-27 01:23:19,203] [main] user.country = ${user.country} [testng] [2024-10-27 01:23:19,203] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-27 01:23:20,102] [main] ---------------------------------------- [testng] [2024-10-27 01:23:20,102] [main] Total files: 21 [testng] [2024-10-27 01:23:20,102] [main] Scan time: 0.899 s (42 ms/file) [testng] [2024-10-27 01:23:20,102] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-27 01:23:25,381] [pool-1-thread-1] Initializing /data/venu/Kontrolle0007.lim: [testng] 01:23:25,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:25,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:25,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-27_01-23-25.log] [testng] 01:23:25,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@222464bf - End of configuration. [testng] [2024-10-27 01:23:25,624] [pool-1-thread-12] Initializing /data/venu/Kontrolle0003.lim: [testng] 01:23:25,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:25,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:25,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-27_01-23-25.log] [testng] 01:23:25,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39a18dff - End of configuration. [testng] [2024-10-27 01:23:25,822] [pool-1-thread-11] Initializing /data/venu/Kontrolle0005.lim: [testng] 01:23:25,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:25,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:25,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-27_01-23-25.log] [testng] 01:23:25,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66123dd0 - End of configuration. [testng] [2024-10-27 01:23:26,018] [pool-1-thread-10] Initializing /data/venu/Kontrolle0012.lim: [testng] 01:23:26,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:26,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:26,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-27_01-23-26.log] [testng] 01:23:26,020 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f51bdec - End of configuration. [testng] [2024-10-27 01:23:26,205] [pool-1-thread-9] Initializing /data/venu/Kontrolle0008.lim: [testng] 01:23:26,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:26,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:26,206 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-27_01-23-26.log] [testng] 01:23:26,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b62e28d - End of configuration. [testng] [2024-10-27 01:23:26,396] [pool-1-thread-8] Initializing /data/venu/Kontrolle0021.lim: [testng] 01:23:26,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:26,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:26,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-27_01-23-26.log] [testng] 01:23:26,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@770361e0 - End of configuration. [testng] [2024-10-27 01:23:26,589] [pool-1-thread-7] Initializing /data/venu/Kontrolle0010.lim: [testng] 01:23:26,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:26,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:26,590 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-27_01-23-26.log] [testng] 01:23:26,590 |-INFO in ch.qos.logback.core.sift.SiftProcessor@426c2e4e - End of configuration. [testng] [2024-10-27 01:23:26,762] [pool-1-thread-6] Initializing /data/venu/Kontrolle0016.lim: [testng] 01:23:26,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:23:26,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:26,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-27_01-23-26.log] [testng] 01:23:26,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fadf11 - End of configuration. [testng] [2024-10-27 01:23:26,926] [pool-1-thread-5] Initializing /data/venu/Kontrolle0017.lim: [testng] 01:23:26,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:23:26,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:26,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-27_01-23-26.log] [testng] 01:23:26,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@253e58ee - End of configuration. [testng] [2024-10-27 01:23:27,108] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] 01:23:27,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:23:27,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:27,109 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-27_01-23-27.log] [testng] 01:23:27,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46126742 - End of configuration. [testng] [2024-10-27 01:23:27,315] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim: [testng] 01:23:27,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:23:27,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:27,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-27_01-23-27.log] [testng] 01:23:27,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53edc2c4 - End of configuration. [testng] [2024-10-27 01:23:27,518] [pool-1-thread-2] Initializing /data/venu/Kontrolle0001.lim: [testng] 01:23:27,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:23:27,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:27,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-27_01-23-27.log] [testng] 01:23:27,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6131348 - End of configuration. [testng] [2024-10-27 01:23:31,758] [pool-1-thread-12] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-10-27 01:23:31,971] [pool-1-thread-10] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-10-27 01:23:32,178] [pool-1-thread-2] Initializing /data/venu/Kontrolle0020.lim: [testng] [2024-10-27 01:23:32,381] [pool-1-thread-8] Initializing /data/venu/Kontrolle0013.lim: [testng] [2024-10-27 01:23:32,600] [pool-1-thread-7] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-10-27 01:23:32,811] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] [2024-10-27 01:23:33,033] [pool-1-thread-5] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-10-27 01:23:33,248] [pool-1-thread-3] Initializing /data/venu/Kontrolle0018.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 19 seconds Finished: SUCCESS