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Started by upstream project "BIOFORMATS-test-repo" build number 236 originally caused by: Started by upstream project "Trigger" build number 261 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins8327246346328862939.sh + '[' specs = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37047_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:34:36,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:34:36,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:34:36,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:34:36,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:34:36,762 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:34:36,762 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:34:36,762 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:34:36,763 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:34:36,763 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5d534f5d - End of configuration. [testng] 01:34:36,764 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@51c668e3 - Registering current configuration as safe fallback point [testng] 01:34:36,764 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2e6a8155 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 743 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-27 01:34:36,773] [main] java.version = 17.0.2 [testng] 01:34:36,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:34:36,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:34:36,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-27_01-34-36.log] [testng] 01:34:36,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-27 01:34:36,918] [main] testng.directory = /data [testng] [2024-10-27 01:34:36,918] [main] testng.configDirectory = /config [testng] [2024-10-27 01:34:36,927] [main] testng.multiplier = 1.0 [testng] [2024-10-27 01:34:36,928] [main] testng.in-memory = false [testng] [2024-10-27 01:34:36,928] [main] testng.allow-missing = false [testng] [2024-10-27 01:34:36,928] [main] user.language = en [testng] [2024-10-27 01:34:36,928] [main] user.country = ${user.country} [testng] [2024-10-27 01:34:36,928] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-27 01:37:59,791] [main] ---------------------------------------- [testng] [2024-10-27 01:37:59,792] [main] Total files: 226 [testng] [2024-10-27 01:37:59,792] [main] Scan time: 202.863 s (897 ms/file) [testng] [2024-10-27 01:37:59,792] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-27 01:40:29,597] [pool-1-thread-1] Initializing /data/fluoview/SpineAnimation.tif: [testng] 01:40:29,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:40:29,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:29,599 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-27_01-40-29.log] [testng] 01:40:29,600 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dcaa96a - End of configuration. [testng] [2024-10-27 01:40:29,808] [pool-1-thread-12] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] 01:40:29,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:40:29,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:29,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-27_01-40-29.log] [testng] 01:40:29,810 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42135a37 - End of configuration. [testng] [2024-10-27 01:40:30,022] [pool-1-thread-11] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] 01:40:30,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:40:30,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:30,024 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-27_01-40-30.log] [testng] 01:40:30,024 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67bee2ae - End of configuration. [testng] [2024-10-27 01:40:30,118] [pool-1-thread-10] Initializing /data/iplab/Blend_Dapi.IPL: [testng] 01:40:30,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:40:30,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:30,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-27_01-40-30.log] [testng] 01:40:30,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18349045 - End of configuration. [testng] [2024-10-27 01:40:30,197] [pool-1-thread-9] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 01:40:30,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:40:30,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:30,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-27_01-40-30.log] [testng] 01:40:30,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@678c12e4 - End of configuration. [testng] [2024-10-27 01:40:30,279] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] 01:40:30,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:40:30,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:30,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-27_01-40-30.log] [testng] 01:40:30,281 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5244f91f - End of configuration. [testng] [2024-10-27 01:40:30,791] [pool-1-thread-7] Initializing /data/iplab/Color Histology.IPL: [testng] 01:40:30,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:40:30,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:30,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-27_01-40-30.log] [testng] 01:40:30,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19a19720 - End of configuration. [testng] [2024-10-27 01:40:30,886] [pool-1-thread-6] Initializing /data/iplab/Blend_Final.IPL: [testng] 01:40:30,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:40:30,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:30,887 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-27_01-40-30.log] [testng] 01:40:30,887 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bc9ab94 - End of configuration. [testng] [2024-10-27 01:40:30,976] [pool-1-thread-5] Initializing /data/fluoview/Sample_XT.tif: [testng] 01:40:30,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:40:30,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:30,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-27_01-40-30.log] [testng] 01:40:30,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64482366 - End of configuration. [testng] [2024-10-27 01:40:31,502] [pool-1-thread-4] Initializing /data/iplab/Blend_DIC.IPL: [testng] 01:40:31,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:40:31,502 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:31,503 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-27_01-40-31.log] [testng] 01:40:31,503 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c425b87 - End of configuration. [testng] [2024-10-27 01:40:31,582] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 01:40:31,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:40:31,583 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:31,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-27_01-40-31.log] [testng] 01:40:31,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36adcaa0 - End of configuration. [testng] [2024-10-27 01:40:31,872] [pool-1-thread-2] Initializing /data/iplab/16Bit XRay.IPL: [testng] 01:40:31,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:40:31,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:31,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-27_01-40-31.log] [testng] 01:40:31,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71b5cb66 - End of configuration. [testng] [2024-10-27 01:40:33,951] [pool-1-thread-6] Initializing /data/iplab/Actin.IPL: [testng] [2024-10-27 01:40:33,976] [pool-1-thread-7] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-10-27 01:40:34,114] [pool-1-thread-2] Initializing /data/iplab/Color Image.IPL: [testng] [2024-10-27 01:40:34,154] [pool-1-thread-11] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2024-10-27 01:40:34,333] [pool-1-thread-4] Initializing /data/iplab/3t3 Cell.IPL: [testng] [2024-10-27 01:40:34,455] [pool-1-thread-3] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] [2024-10-27 01:40:34,854] [pool-1-thread-9] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2024-10-27 01:40:35,305] [pool-1-thread-12] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-10-27 01:40:35,342] [pool-1-thread-1] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-10-27 01:40:35,561] [pool-1-thread-10] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-10-27 01:40:36,125] [pool-1-thread-5] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2024-10-27 01:40:36,340] [pool-1-thread-4] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-10-27 01:40:36,949] [pool-1-thread-2] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] [2024-10-27 01:40:37,429] [pool-1-thread-6] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2024-10-27 01:40:37,657] [pool-1-thread-11] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] [2024-10-27 01:40:38,471] [pool-1-thread-12] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 10 seconds Finished: SUCCESS