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Started by upstream project "BIOFORMATS-test-repo" build number 236 originally caused by: Started by upstream project "Trigger" build number 261 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins11723332682523532850.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37109_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:47:02,934 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:47:02,936 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 01:47:02,936 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:47:02,937 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:47:02,937 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:47:02,938 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:47:02,938 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:47:02,938 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:47:02,938 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:47:02,939 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:47:02,939 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:47:02,940 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:47:03,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:47:03,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:47:03,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:47:03,150 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:47:03,156 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:47:03,157 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:47:03,157 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:47:03,157 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:47:03,157 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 01:47:03,158 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 01:47:03,158 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 220 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-27 01:47:03,170] [main] java.version = 17.0.2 [testng] 01:47:03,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:47:03,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:03,220 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-27_01-47-03.log] [testng] 01:47:03,221 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-27 01:47:03,223] [main] testng.directory = /data [testng] [2024-10-27 01:47:03,224] [main] testng.configDirectory = /config [testng] [2024-10-27 01:47:03,234] [main] testng.multiplier = 1.0 [testng] [2024-10-27 01:47:03,235] [main] testng.in-memory = false [testng] [2024-10-27 01:47:03,235] [main] testng.allow-missing = false [testng] [2024-10-27 01:47:03,235] [main] user.language = en [testng] [2024-10-27 01:47:03,236] [main] user.country = ${user.country} [testng] [2024-10-27 01:47:03,236] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-27 01:49:24,882] [main] ---------------------------------------- [testng] [2024-10-27 01:49:24,882] [main] Total files: 268 [testng] [2024-10-27 01:49:24,882] [main] Scan time: 141.646 s (528 ms/file) [testng] [2024-10-27 01:49:24,882] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-27 01:52:58,871] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] 01:52:58,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:52:58,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:58,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-27_01-52-58.log] [testng] 01:52:58,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1816f5d4 - End of configuration. [testng] [2024-10-27 01:52:59,198] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] 01:52:59,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:52:59,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:59,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-27_01-52-59.log] [testng] 01:52:59,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f525426 - End of configuration. [testng] [2024-10-27 01:52:59,408] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] 01:52:59,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:52:59,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:59,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-27_01-52-59.log] [testng] 01:52:59,410 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2193e3f1 - End of configuration. [testng] [2024-10-27 01:52:59,742] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 01:52:59,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:52:59,742 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:59,743 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-27_01-52-59.log] [testng] 01:52:59,743 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25678a7 - End of configuration. [testng] [2024-10-27 01:53:00,063] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 01:53:00,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:53:00,063 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:00,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-27_01-53-00.log] [testng] 01:53:00,064 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dd0a065 - End of configuration. [testng] [2024-10-27 01:53:00,383] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] 01:53:00,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:53:00,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:00,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-27_01-53-00.log] [testng] 01:53:00,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e6ec946 - End of configuration. [testng] [2024-10-27 01:53:00,688] [pool-1-thread-7] Initializing /data/steve/TIFF/HAFF SEM: [testng] 01:53:00,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:53:00,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:00,689 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-27_01-53-00.log] [testng] 01:53:00,689 |-INFO in ch.qos.logback.core.sift.SiftProcessor@620ca6fa - End of configuration. [testng] [2024-10-27 01:53:01,738] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] 01:53:01,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:53:01,738 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:01,739 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-27_01-53-01.log] [testng] 01:53:01,739 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37af3e16 - End of configuration. [testng] [2024-10-27 01:53:02,029] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] 01:53:02,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:53:02,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:02,030 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-27_01-53-02.log] [testng] 01:53:02,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f549148 - End of configuration. [testng] [2024-10-27 01:53:02,341] [pool-1-thread-4] Initializing /data/steve/FITS/M51.fits: [testng] 01:53:02,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:53:02,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:02,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-27_01-53-02.log] [testng] 01:53:02,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d1a3071 - End of configuration. [testng] [2024-10-27 01:53:02,407] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] 01:53:02,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:53:02,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:02,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-27_01-53-02.log] [testng] 01:53:02,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@155443b1 - End of configuration. [testng] [2024-10-27 01:53:03,334] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] 01:53:03,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:53:03,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:03,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-27_01-53-03.log] [testng] 01:53:03,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6488e7af - End of configuration. [testng] [2024-10-27 01:53:06,904] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-10-27 01:53:08,099] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-10-27 01:53:08,405] [pool-1-thread-9] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-10-27 01:53:08,642] [pool-1-thread-10] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-10-27 01:53:09,579] [pool-1-thread-5] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-10-27 01:53:09,922] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-10-27 01:53:10,889] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-10-27 01:53:11,098] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-10-27 01:53:14,578] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-10-27 01:53:15,847] [pool-1-thread-4] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-10-27 01:53:16,473] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-10-27 01:53:16,654] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-10-27 01:53:16,980] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-10-27 01:53:17,521] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-10-27 01:53:17,799] [pool-1-thread-3] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-10-27 01:53:18,724] [pool-1-thread-1] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-10-27 01:53:19,577] [pool-1-thread-2] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-10-27 01:53:21,875] [pool-1-thread-4] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-10-27 01:53:22,801] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-10-27 01:53:24,204] [pool-1-thread-12] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-10-27 01:53:24,459] [pool-1-thread-10] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-10-27 01:53:25,621] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-10-27 01:53:25,711] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-10-27 01:53:25,981] [pool-1-thread-9] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-10-27 01:53:26,888] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-10-27 01:53:27,508] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-10-27 01:53:28,116] [pool-1-thread-7] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-10-27 01:53:29,025] [pool-1-thread-11] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-10-27 01:53:30,627] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-10-27 01:53:30,952] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-10-27 01:53:31,250] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-10-27 01:53:31,590] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-10-27 01:53:32,123] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-10-27 01:53:33,097] [pool-1-thread-5] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-10-27 01:53:34,477] [pool-1-thread-1] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-10-27 01:53:35,996] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-10-27 01:53:40,698] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-10-27 01:53:41,359] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-10-27 01:53:42,313] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-10-27 01:53:42,889] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-10-27 01:53:44,648] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-10-27 01:53:47,154] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-10-27 01:53:48,055] [pool-1-thread-9] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-10-27 01:53:49,898] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-10-27 01:53:50,313] [pool-1-thread-7] Initializing /data/steve/FITS/M104.fits: [testng] [2024-10-27 01:53:51,078] [pool-1-thread-3] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-10-27 01:53:51,730] [pool-1-thread-6] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-10-27 01:53:52,973] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-10-27 01:53:54,385] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-10-27 01:53:55,488] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-10-27 01:53:57,229] [pool-1-thread-2] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-10-27 01:53:58,136] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-10-27 01:53:58,564] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-10-27 01:53:59,836] [pool-1-thread-8] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-10-27 01:54:01,061] [pool-1-thread-12] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-10-27 01:54:01,557] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-10-27 01:54:02,010] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-10-27 01:54:02,266] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-10-27 01:54:04,098] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-10-27 01:54:04,899] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-10-27 01:54:05,279] [pool-1-thread-9] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-10-27 01:54:06,388] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-10-27 01:54:06,765] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-10-27 01:54:06,935] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-10-27 01:54:07,399] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-10-27 01:54:07,620] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-10-27 01:54:08,242] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-10-27 01:54:09,236] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-10-27 01:54:10,816] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-10-27 01:54:12,007] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-10-27 01:54:12,398] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-10-27 01:54:13,314] [pool-1-thread-6] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-10-27 01:54:13,808] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-10-27 01:54:14,953] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-10-27 01:54:15,331] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-10-27 01:54:15,944] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-10-27 01:54:17,220] [pool-1-thread-9] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-10-27 01:54:18,235] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-10-27 01:54:19,619] [pool-1-thread-7] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-10-27 01:54:20,273] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-10-27 01:54:20,600] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-10-27 01:54:20,870] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-10-27 01:54:21,266] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-10-27 01:54:21,920] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-10-27 01:54:23,233] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-10-27 01:54:23,641] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-10-27 01:54:24,291] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-10-27 01:54:24,866] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-10-27 01:54:26,168] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-10-27 01:54:26,802] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-10-27 01:54:28,153] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-10-27 01:54:28,673] [pool-1-thread-4] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-10-27 01:54:28,800] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-10-27 01:54:30,008] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-10-27 01:54:30,337] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-10-27 01:54:30,787] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-10-27 01:54:31,213] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-10-27 01:54:32,193] [pool-1-thread-4] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-10-27 01:54:32,650] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-10-27 01:54:33,149] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-10-27 01:54:33,539] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-10-27 01:54:33,908] [pool-1-thread-10] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-10-27 01:54:34,291] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-10-27 01:54:35,604] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-10-27 01:54:37,438] [pool-1-thread-4] Initializing /data/steve/FITS/M13.fits: [testng] [2024-10-27 01:54:37,856] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-10-27 01:54:39,107] [pool-1-thread-8] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-10-27 01:54:40,353] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-10-27 01:54:40,695] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-10-27 01:54:41,019] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-10-27 01:54:41,287] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-10-27 01:54:42,417] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-10-27 01:54:43,145] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-10-27 01:54:44,583] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-10-27 01:54:44,880] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-10-27 01:54:46,155] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-10-27 01:54:46,692] [pool-1-thread-5] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-10-27 01:54:48,026] [pool-1-thread-9] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-10-27 01:54:48,432] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-10-27 01:54:49,090] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-10-27 01:54:49,436] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-10-27 01:54:49,872] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-10-27 01:54:51,119] [pool-1-thread-12] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-10-27 01:54:52,241] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-10-27 01:54:53,606] [pool-1-thread-2] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-10-27 01:54:54,837] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-10-27 01:54:55,169] [pool-1-thread-9] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-10-27 01:54:56,297] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-10-27 01:54:57,391] [pool-1-thread-6] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-10-27 01:54:58,431] [pool-1-thread-1] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-10-27 01:54:58,799] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-10-27 01:55:00,836] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-10-27 01:55:02,536] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-10-27 01:55:03,282] [pool-1-thread-8] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-10-27 01:55:03,800] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-10-27 01:55:04,021] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-10-27 01:55:04,365] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-10-27 01:55:05,253] [pool-1-thread-12] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-10-27 01:55:05,591] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-10-27 01:55:05,955] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-10-27 01:55:06,512] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-10-27 01:55:07,733] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-10-27 01:55:08,109] [pool-1-thread-9] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-10-27 01:55:08,951] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-10-27 01:55:09,318] [pool-1-thread-2] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-10-27 01:55:09,887] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-10-27 01:55:10,148] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-10-27 01:55:11,274] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 minutes 21 seconds Finished: SUCCESS