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Started by upstream project "BIOFORMATS-test-repo" build number 236 originally caused by: Started by upstream project "Trigger" build number 261 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins9502545167211275150.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37115_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:28:18,442 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:28:18,444 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 02:28:18,444 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:28:18,445 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:28:18,445 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:28:18,445 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:28:18,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:28:18,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:28:18,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:28:18,447 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:28:18,447 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:28:18,447 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:28:18,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:28:18,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:28:18,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:28:18,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:28:18,642 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:28:18,642 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:28:18,643 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:28:18,643 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:28:18,643 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 02:28:18,644 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 02:28:18,644 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-27 02:28:18,653] [main] java.version = 17.0.2 [testng] 02:28:18,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:28:18,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:18,696 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-27_02-28-18.log] [testng] 02:28:18,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-27 02:28:18,699] [main] testng.directory = /data [testng] [2024-10-27 02:28:18,699] [main] testng.configDirectory = /config [testng] [2024-10-27 02:28:18,708] [main] testng.multiplier = 1.0 [testng] [2024-10-27 02:28:18,709] [main] testng.in-memory = false [testng] [2024-10-27 02:28:18,709] [main] testng.allow-missing = false [testng] [2024-10-27 02:28:18,709] [main] user.language = en [testng] [2024-10-27 02:28:18,709] [main] user.country = ${user.country} [testng] [2024-10-27 02:28:18,709] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-27 02:28:19,403] [main] ---------------------------------------- [testng] [2024-10-27 02:28:19,403] [main] Total files: 19 [testng] [2024-10-27 02:28:19,403] [main] Scan time: 0.694 s (36 ms/file) [testng] [2024-10-27 02:28:19,403] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-27 02:28:24,954] [pool-1-thread-1] Initializing /data/samples/800R PICT0010.MRW: [testng] 02:28:24,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:28:24,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:24,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-27_02-28-24.log] [testng] 02:28:24,956 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a26acaa - End of configuration. [testng] [2024-10-27 02:28:25,352] [pool-1-thread-12] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] 02:28:25,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:28:25,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:25,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-27_02-28-25.log] [testng] 02:28:25,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d5c5f96 - End of configuration. [testng] [2024-10-27 02:28:25,817] [pool-1-thread-11] Initializing /data/samples/3200R PICT0006.MRW: [testng] 02:28:25,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:28:25,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:25,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-27_02-28-25.log] [testng] 02:28:25,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46653fbf - End of configuration. [testng] [2024-10-27 02:28:26,236] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW: [testng] 02:28:26,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:28:26,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:26,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-27_02-28-26.log] [testng] 02:28:26,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12af3fe6 - End of configuration. [testng] [2024-10-27 02:28:26,613] [pool-1-thread-9] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] 02:28:26,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:28:26,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:26,614 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-27_02-28-26.log] [testng] 02:28:26,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5389b543 - End of configuration. [testng] [2024-10-27 02:28:26,983] [pool-1-thread-8] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] 02:28:26,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:28:26,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:26,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-27_02-28-26.log] [testng] 02:28:26,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ed65e2 - End of configuration. [testng] [2024-10-27 02:28:27,385] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 02:28:27,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:28:27,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:27,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-27_02-28-27.log] [testng] 02:28:27,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11ad86a8 - End of configuration. [testng] [2024-10-27 02:28:27,727] [pool-1-thread-6] Initializing /data/samples/400R PICT0003.MRW: [testng] 02:28:27,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:28:27,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:27,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-27_02-28-27.log] [testng] 02:28:27,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7938f0d2 - End of configuration. [testng] [2024-10-27 02:28:28,120] [pool-1-thread-5] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 02:28:28,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:28:28,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:28,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-27_02-28-28.log] [testng] 02:28:28,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cd238e3 - End of configuration. [testng] [2024-10-27 02:28:28,511] [pool-1-thread-4] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] 02:28:28,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:28:28,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:28,513 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-27_02-28-28.log] [testng] 02:28:28,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a3b5a4b - End of configuration. [testng] [2024-10-27 02:28:28,915] [pool-1-thread-3] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 02:28:28,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:28:28,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:28,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-27_02-28-28.log] [testng] 02:28:28,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b85bc85 - End of configuration. [testng] [2024-10-27 02:28:29,313] [pool-1-thread-2] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] 02:28:29,314 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:28:29,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:28:29,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-27_02-28-29.log] [testng] 02:28:29,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c320cb1 - End of configuration. [testng] [2024-10-27 02:28:36,995] [pool-1-thread-8] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] [2024-10-27 02:28:37,208] [pool-1-thread-2] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] [2024-10-27 02:28:37,467] [pool-1-thread-11] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] [2024-10-27 02:28:37,691] [pool-1-thread-12] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] [2024-10-27 02:28:37,942] [pool-1-thread-6] Initializing /data/samples/1600R PICT0005.MRW: [testng] [2024-10-27 02:28:38,177] [pool-1-thread-4] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] [2024-10-27 02:28:38,449] [pool-1-thread-9] Initializing /data/samples/200R PICT0002.MRW: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 29 seconds Finished: SUCCESS