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Started by upstream project "BIOFORMATS-test-repo" build number 236 originally caused by: Started by upstream project "Trigger" build number 261 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins1255636946774931259.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37149_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:05:53,396 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:05:53,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 03:05:53,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:05:53,398 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:05:53,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:05:53,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:05:53,399 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:05:53,399 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:05:53,399 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:05:53,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:05:53,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:05:53,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:05:53,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:05:53,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:05:53,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:05:53,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:05:53,584 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:05:53,584 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:05:53,584 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:05:53,585 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:05:53,585 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 03:05:53,585 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 03:05:53,585 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-27 03:05:53,594] [main] java.version = 17.0.2 [testng] 03:05:53,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:05:53,598 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:05:53,638 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-27_03-05-53.log] [testng] 03:05:53,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-27 03:05:53,641] [main] testng.directory = /data [testng] [2024-10-27 03:05:53,641] [main] testng.configDirectory = /config [testng] [2024-10-27 03:05:53,649] [main] testng.multiplier = 1.0 [testng] [2024-10-27 03:05:53,650] [main] testng.in-memory = false [testng] [2024-10-27 03:05:53,650] [main] testng.allow-missing = false [testng] [2024-10-27 03:05:53,650] [main] user.language = en [testng] [2024-10-27 03:05:53,650] [main] user.country = ${user.country} [testng] [2024-10-27 03:05:53,650] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-27 03:07:08,227] [main] ---------------------------------------- [testng] [2024-10-27 03:07:08,227] [main] Total files: 15735 [testng] [2024-10-27 03:07:08,227] [main] Scan time: 74.576 s (4 ms/file) [testng] [2024-10-27 03:07:08,227] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-27 03:08:13,658] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] 03:08:13,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:08:13,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:08:13,660 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-27_03-08-13.log] [testng] 03:08:13,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a00d5b6 - End of configuration. [testng] [2024-10-27 03:08:13,929] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] 03:08:13,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:08:13,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:08:13,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-27_03-08-13.log] [testng] 03:08:13,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@150f7041 - End of configuration. [testng] [2024-10-27 03:08:14,608] [pool-1-thread-11] Initializing /data/converted/converted/damian.tif: [testng] 03:08:14,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:08:14,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:08:14,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-27_03-08-14.log] [testng] 03:08:14,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e2341cf - End of configuration. [testng] [2024-10-27 03:08:14,892] [pool-1-thread-10] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 03:08:14,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:08:14,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:08:14,893 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-27_03-08-14.log] [testng] 03:08:14,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b770500 - End of configuration. [testng] [2024-10-27 03:08:16,047] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 03:08:16,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:08:16,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:08:16,048 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-27_03-08-16.log] [testng] 03:08:16,048 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d0995c8 - End of configuration. [testng] [2024-10-27 03:08:16,514] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] 03:08:16,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:08:16,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:08:16,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-27_03-08-16.log] [testng] 03:08:16,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dc10d29 - End of configuration. [testng] [2024-10-27 03:08:16,948] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] 03:08:16,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:08:16,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:08:16,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-27_03-08-16.log] [testng] 03:08:16,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d8c6b - End of configuration. [testng] [2024-10-27 03:08:17,333] [pool-1-thread-6] Initializing /data/converted/sebastien/test.tif: [testng] 03:08:17,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:08:17,333 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:08:17,334 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-27_03-08-17.log] [testng] 03:08:17,334 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b6cb122 - End of configuration. [testng] [2024-10-27 03:08:17,768] [pool-1-thread-5] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 03:08:17,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:08:17,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:08:17,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-27_03-08-17.log] [testng] 03:08:17,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@940f2a4 - End of configuration. [testng] [2024-10-27 03:08:18,272] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] 03:08:18,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:08:18,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:08:18,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-27_03-08-18.log] [testng] 03:08:18,274 |-INFO in ch.qos.logback.core.sift.SiftProcessor@790b1f63 - End of configuration. [testng] [2024-10-27 03:08:18,751] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] 03:08:18,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:08:18,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:08:18,752 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-27_03-08-18.log] [testng] 03:08:18,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e2c0b53 - End of configuration. [testng] [2024-10-27 03:08:19,177] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] 03:08:19,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:08:19,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:08:19,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-27_03-08-19.log] [testng] 03:08:19,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75934b89 - End of configuration. [testng] [2024-10-27 03:08:31,769] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-10-27 03:08:36,925] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-10-27 03:08:37,928] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-10-27 03:08:56,004] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-10-27 03:10:24,526] [pool-1-thread-5] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-10-27 03:10:28,076] [pool-1-thread-4] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-10-27 03:10:36,164] [pool-1-thread-1] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-10-27 03:10:46,768] [pool-1-thread-1] Initializing /data/converted/michel/e.tif: [testng] [2024-10-27 03:11:12,252] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-10-27 03:11:28,734] [pool-1-thread-4] Initializing /data/converted/michel/a.tif: [testng] [2024-10-27 03:11:31,065] [pool-1-thread-11] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-10-27 03:11:39,924] [pool-1-thread-4] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-10-27 03:11:46,786] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-10-27 03:12:02,387] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-10-27 03:12:10,476] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-10-27 03:12:21,079] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-10-27 03:12:24,508] [pool-1-thread-2] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-10-27 03:12:27,253] [pool-1-thread-12] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-10-27 03:12:36,902] [pool-1-thread-6] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-10-27 03:12:39,481] [pool-1-thread-7] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-10-27 03:12:54,152] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-10-27 03:12:59,387] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-10-27 03:13:10,082] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-10-27 03:13:11,678] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-10-27 03:13:47,536] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-10-27 03:13:59,617] [pool-1-thread-7] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-10-27 03:14:12,544] [pool-1-thread-8] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-10-27 03:14:19,514] [pool-1-thread-2] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-10-27 03:14:25,328] [pool-1-thread-11] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-10-27 03:14:58,041] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-10-27 03:15:33,594] [pool-1-thread-12] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-10-27 03:16:03,213] [pool-1-thread-12] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-10-27 03:16:26,204] [pool-1-thread-12] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-10-27 03:16:44,656] [pool-1-thread-3] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-10-27 03:16:49,540] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-10-27 03:20:03,008] [pool-1-thread-6] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-10-27 03:20:31,198] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-10-27 03:21:03,885] [pool-1-thread-4] Initializing /data/scott/Slide133-08.tif: [testng] [2024-10-27 03:21:30,274] [pool-1-thread-4] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-10-27 03:21:31,812] [pool-1-thread-1] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-10-27 03:22:03,302] [pool-1-thread-4] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-10-27 03:22:11,471] [pool-1-thread-11] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-10-27 03:22:39,766] [pool-1-thread-11] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-10-27 03:22:41,142] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-10-27 03:23:00,126] [pool-1-thread-11] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-10-27 03:24:17,525] [pool-1-thread-12] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-10-27 03:25:52,603] [pool-1-thread-6] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-10-27 03:27:44,067] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-10-27 03:28:05,076] [pool-1-thread-10] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-10-27 03:28:13,443] [pool-1-thread-9] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-10-27 03:28:51,235] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-10-27 03:29:09,890] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-10-27 03:33:41,082] [pool-1-thread-3] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-10-27 03:34:03,657] [pool-1-thread-2] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-10-27 03:34:07,320] [pool-1-thread-3] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-10-27 03:34:27,184] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-10-27 03:34:48,055] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-10-27 03:36:18,957] [pool-1-thread-1] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-10-27 03:36:42,163] [pool-1-thread-4] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-10-27 03:36:44,240] [pool-1-thread-1] Initializing /data/scott/Slide133-04.tif: [testng] [2024-10-27 03:36:53,780] [pool-1-thread-10] Initializing /data/converted/converted/2chz.tif: [testng] [2024-10-27 03:37:13,830] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-10-27 03:38:57,452] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-10-27 03:40:15,265] [pool-1-thread-10] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-10-27 03:40:21,595] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-10-27 03:40:35,411] [pool-1-thread-4] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-10-27 03:40:56,338] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-10-27 03:41:11,996] [pool-1-thread-5] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-10-27 03:41:37,231] [pool-1-thread-5] Initializing /data/converted/michel/c.tif: [testng] [2024-10-27 03:42:00,352] [pool-1-thread-4] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-10-27 03:42:04,895] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-10-27 03:42:15,606] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-10-27 03:42:23,657] [pool-1-thread-2] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-10-27 03:42:58,399] [pool-1-thread-4] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-10-27 03:44:21,454] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-10-27 03:44:51,884] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-10-27 03:45:10,239] [pool-1-thread-1] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-10-27 03:45:58,234] [pool-1-thread-3] Initializing /data/converted/dietmar/138.tif: [testng] [2024-10-27 03:46:46,214] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-10-27 03:47:56,687] [pool-1-thread-11] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-10-27 03:49:45,186] [pool-1-thread-10] Initializing /data/converted/dietmar/137.tif: [testng] [2024-10-27 03:50:27,894] [pool-1-thread-5] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-10-27 03:50:31,353] [pool-1-thread-6] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-10-27 03:51:13,807] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-10-27 03:51:55,170] [pool-1-thread-7] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-10-27 03:52:01,376] [pool-1-thread-2] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-10-27 03:52:04,314] [pool-1-thread-5] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-10-27 03:52:24,378] [pool-1-thread-7] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-10-27 03:52:29,561] [pool-1-thread-4] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-10-27 03:52:38,934] [pool-1-thread-2] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-10-27 03:52:49,421] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-10-27 03:52:55,221] [pool-1-thread-4] Initializing /data/scott/Slide133-11.tif: [testng] [2024-10-27 03:53:08,531] [pool-1-thread-3] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-10-27 03:53:10,189] [pool-1-thread-2] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-10-27 03:53:20,672] [pool-1-thread-4] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-10-27 03:53:47,200] [pool-1-thread-2] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-10-27 03:54:05,958] [pool-1-thread-2] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-10-27 03:54:09,162] [pool-1-thread-1] Initializing /data/converted/michel/d.tif: [testng] [2024-10-27 03:54:16,997] [pool-1-thread-12] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-10-27 03:54:34,492] [pool-1-thread-1] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-10-27 03:54:41,201] [pool-1-thread-12] Initializing /data/scott/Slide133-01.tif: [testng] [2024-10-27 03:54:53,921] [pool-1-thread-1] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-10-27 03:54:58,223] [pool-1-thread-5] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-10-27 03:55:04,474] [pool-1-thread-12] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-10-27 03:55:30,360] [pool-1-thread-12] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-10-27 03:55:40,747] [pool-1-thread-5] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-10-27 03:55:51,213] [pool-1-thread-10] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-10-27 03:55:56,380] [pool-1-thread-12] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-10-27 03:56:10,256] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-10-27 03:56:19,008] [pool-1-thread-12] Initializing /data/converted/nicolas/image.tif: [testng] [2024-10-27 03:56:30,704] [pool-1-thread-11] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-10-27 03:56:37,737] [pool-1-thread-12] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-10-27 03:56:39,182] [pool-1-thread-11] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] 04:33:10,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:33:10,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:33:10,894 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-27_04-33-10.log] [testng] 04:33:10,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41fc5625 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 87 minutes 23 seconds Finished: SUCCESS