![[Jenkins]](/jenkins/static/f6f303f9/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 236 originally caused by: Started by upstream project "Trigger" build number 261 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins5258484772592225132.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37178_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:06:08,687 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:06:08,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 04:06:08,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:06:08,689 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:06:08,690 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:06:08,690 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:06:08,690 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:06:08,690 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:06:08,691 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:06:08,691 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:06:08,691 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:06:08,692 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:06:08,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:06:08,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:06:08,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:06:08,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:06:08,880 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:06:08,880 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:06:08,881 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:06:08,881 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:06:08,881 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 04:06:08,882 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 04:06:08,882 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-27 04:06:08,890] [main] java.version = 17.0.2 [testng] 04:06:08,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:06:08,893 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:08,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-27_04-06-08.log] [testng] 04:06:08,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-27 04:06:08,938] [main] testng.directory = /data [testng] [2024-10-27 04:06:08,938] [main] testng.configDirectory = /config [testng] [2024-10-27 04:06:08,947] [main] testng.multiplier = 1.0 [testng] [2024-10-27 04:06:08,948] [main] testng.in-memory = false [testng] [2024-10-27 04:06:08,948] [main] testng.allow-missing = false [testng] [2024-10-27 04:06:08,948] [main] user.language = en [testng] [2024-10-27 04:06:08,948] [main] user.country = ${user.country} [testng] [2024-10-27 04:06:08,948] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-27 04:06:13,513] [main] ---------------------------------------- [testng] [2024-10-27 04:06:13,513] [main] Total files: 22 [testng] [2024-10-27 04:06:13,513] [main] Scan time: 4.565 s (207 ms/file) [testng] [2024-10-27 04:06:13,513] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-27 04:06:27,932] [pool-1-thread-1] Initializing /data/converted/clown.ipw: [testng] 04:06:27,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:06:27,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:27,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-27_04-06-27.log] [testng] 04:06:27,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28298357 - End of configuration. [testng] [2024-10-27 04:06:28,235] [pool-1-thread-12] Initializing /data/converted/dub01.seq: [testng] 04:06:28,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:06:28,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:28,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-27_04-06-28.log] [testng] 04:06:28,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b6081c8 - End of configuration. [testng] [2024-10-27 04:06:28,578] [pool-1-thread-11] Initializing /data/samples/FLDUAL.TIF: [testng] 04:06:28,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:06:28,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:28,579 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-27_04-06-28.log] [testng] 04:06:28,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f434164 - End of configuration. [testng] [2024-10-27 04:06:29,370] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 04:06:29,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:06:29,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:29,371 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-27_04-06-29.log] [testng] 04:06:29,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d30f7c5 - End of configuration. [testng] [2024-10-27 04:06:29,709] [pool-1-thread-9] Initializing /data/converted/clown8c.seq: [testng] 04:06:29,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:06:29,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:29,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-27_04-06-29.log] [testng] 04:06:29,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71dca664 - End of configuration. [testng] [2024-10-27 04:06:30,056] [pool-1-thread-8] Initializing /data/xiuwen/head2.seq: [testng] 04:06:30,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:06:30,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:30,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-27_04-06-30.log] [testng] 04:06:30,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27761594 - End of configuration. [testng] [2024-10-27 04:06:30,476] [pool-1-thread-7] Initializing /data/converted/mitosis-test.ipw: [testng] 04:06:30,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:06:30,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:30,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-27_04-06-30.log] [testng] 04:06:30,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@134e6961 - End of configuration. [testng] [2024-10-27 04:06:30,817] [pool-1-thread-6] Initializing /data/converted/clown8c.tif: [testng] 04:06:30,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:06:30,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:30,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-27_04-06-30.log] [testng] 04:06:30,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@259294a0 - End of configuration. [testng] [2024-10-27 04:06:31,700] [pool-1-thread-5] Initializing /data/converted/dub01.ipw: [testng] 04:06:31,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:06:31,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:31,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-27_04-06-31.log] [testng] 04:06:31,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f7ac6fa - End of configuration. [testng] [2024-10-27 04:06:32,011] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 04:06:32,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:06:32,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:32,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-27_04-06-32.log] [testng] 04:06:32,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a25cb77 - End of configuration. [testng] [2024-10-27 04:06:32,335] [pool-1-thread-3] Initializing /data/converted/dub01.pic: [testng] 04:06:32,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:06:32,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:32,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-27_04-06-32.log] [testng] 04:06:32,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e9f6443 - End of configuration. [testng] [2024-10-27 04:06:32,657] [pool-1-thread-2] Initializing /data/converted/mitosis-test.seq: [testng] 04:06:32,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:06:32,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:32,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-27_04-06-32.log] [testng] 04:06:32,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2070a583 - End of configuration. [testng] [2024-10-27 04:06:36,790] [pool-1-thread-7] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-10-27 04:06:37,600] [pool-1-thread-9] Initializing /data/converted/clown.seq: [testng] [2024-10-27 04:06:37,933] [pool-1-thread-2] Initializing /data/samples/HEART.SEQ: [testng] [2024-10-27 04:06:38,244] [pool-1-thread-1] Initializing /data/converted/mitosis-test.tif: [testng] [2024-10-27 04:06:39,201] [pool-1-thread-5] Initializing /data/converted/clown8c.ipw: [testng] [2024-10-27 04:06:39,553] [pool-1-thread-3] Initializing /data/alex/AFAset0003.ips: [testng] [2024-10-27 04:06:39,873] [pool-1-thread-12] Initializing /data/samples/TISSUE.TIF: [testng] [2024-10-27 04:06:40,697] [pool-1-thread-4] Initializing /data/converted/clown.tif: [testng] [2024-10-27 04:06:41,035] [pool-1-thread-10] Initializing /data/samples/PROBE.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 31 seconds Finished: SUCCESS