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Started by upstream project "BIOFORMATS-test-repo" build number 237 originally caused by: Started by upstream project "Trigger" build number 262 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins2807230221290240548.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_37200_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:26:38,317 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:26:38,318 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:26:38,318 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:26:38,320 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:26:38,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:26:38,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:26:38,320 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:26:38,320 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:26:38,321 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:26:38,321 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:26:38,321 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:26:38,321 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:26:38,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:26:38,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:26:38,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:26:38,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:26:38,604 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:26:38,605 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:26:38,605 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:26:38,605 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:26:38,605 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:26:38,606 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:26:38,606 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 285 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-28 00:26:38,616] [main] java.version = 1.8.0_342 [testng] 00:26:38,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:26:38,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:26:38,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-28_00-26-38.log] [testng] 00:26:38,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-28 00:26:38,673] [main] testng.directory = /data [testng] [2024-10-28 00:26:38,673] [main] testng.configDirectory = /config [testng] [2024-10-28 00:26:38,686] [main] testng.multiplier = 1.0 [testng] [2024-10-28 00:26:38,687] [main] testng.in-memory = false [testng] [2024-10-28 00:26:38,687] [main] testng.allow-missing = false [testng] [2024-10-28 00:26:38,687] [main] user.language = fr [testng] [2024-10-28 00:26:38,687] [main] user.country = FR [testng] [2024-10-28 00:26:38,687] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-28 00:26:56,662] [main] ---------------------------------------- [testng] [2024-10-28 00:26:56,662] [main] Total files: 21 [testng] [2024-10-28 00:26:56,662] [main] Scan time: 17.975 s (855 ms/file) [testng] [2024-10-28 00:26:56,662] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-28 00:27:24,541] [pool-1-thread-1] Initializing /data/stefan/001_q15.txt: [testng] 00:27:24,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:27:24,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:24,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-28_00-27-24.log] [testng] 00:27:24,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75f1427c - End of configuration. [testng] [2024-10-28 00:27:25,557] [pool-1-thread-12] Initializing /data/stefan/001_q18.txt: [testng] 00:27:25,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:27:25,557 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:25,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-28_00-27-25.log] [testng] 00:27:25,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b6ee0e4 - End of configuration. [testng] [2024-10-28 00:27:26,748] [pool-1-thread-11] Initializing /data/stefan/001_q13.txt: [testng] 00:27:26,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:27:26,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:26,749 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-28_00-27-26.log] [testng] 00:27:26,749 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e6933de - End of configuration. [testng] [2024-10-28 00:27:27,908] [pool-1-thread-10] Initializing /data/stefan/001_q11.txt: [testng] 00:27:27,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:27:27,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:27,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-28_00-27-27.log] [testng] 00:27:27,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5feb9152 - End of configuration. [testng] [2024-10-28 00:27:29,724] [pool-1-thread-9] Initializing /data/stefan/001_q04.txt: [testng] 00:27:29,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:27:29,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:29,725 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-28_00-27-29.log] [testng] 00:27:29,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cb23d5e - End of configuration. [testng] [2024-10-28 00:27:30,665] [pool-1-thread-8] Initializing /data/stefan/001_q09.txt: [testng] 00:27:30,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:27:30,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:30,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-28_00-27-30.log] [testng] 00:27:30,666 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bfbf8ec - End of configuration. [testng] [2024-10-28 00:27:32,625] [pool-1-thread-7] Initializing /data/stefan/001_q06.txt: [testng] 00:27:32,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:27:32,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:32,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-28_00-27-32.log] [testng] 00:27:32,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@276cd805 - End of configuration. [testng] [2024-10-28 00:27:33,587] [pool-1-thread-6] Initializing /data/stefan/001_q01.txt: [testng] 00:27:33,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:27:33,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:33,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-28_00-27-33.log] [testng] 00:27:33,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6409237 - End of configuration. [testng] [2024-10-28 00:27:34,693] [pool-1-thread-5] Initializing /data/stefan/001_q14.txt: [testng] 00:27:34,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:27:34,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:34,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-28_00-27-34.log] [testng] 00:27:34,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d5176d4 - End of configuration. [testng] [2024-10-28 00:27:36,655] [pool-1-thread-4] Initializing /data/stefan/001_q10.txt: [testng] 00:27:36,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:27:36,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:36,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-28_00-27-36.log] [testng] 00:27:36,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4170ee29 - End of configuration. [testng] [2024-10-28 00:27:39,681] [pool-1-thread-3] Initializing /data/stefan/001_q17.txt: [testng] 00:27:39,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:27:39,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:39,682 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-28_00-27-39.log] [testng] 00:27:39,682 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43726102 - End of configuration. [testng] [2024-10-28 00:27:41,132] [pool-1-thread-2] Initializing /data/stefan/001_q16.txt: [testng] 00:27:41,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:27:41,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:27:41,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-28_00-27-41.log] [testng] 00:27:41,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4175039f - End of configuration. [testng] [2024-10-28 00:27:59,742] [pool-1-thread-9] Initializing /data/stefan/001_q02.txt: [testng] [2024-10-28 00:28:01,646] [pool-1-thread-6] Initializing /data/stefan/001_q05.txt: [testng] [2024-10-28 00:28:03,716] [pool-1-thread-2] Initializing /data/stefan/001_q03.txt: [testng] [2024-10-28 00:28:05,494] [pool-1-thread-11] Initializing /data/stefan/001_q08.txt: [testng] [2024-10-28 00:28:08,292] [pool-1-thread-7] Initializing /data/stefan/001_q07.txt: [testng] [2024-10-28 00:28:10,749] [pool-1-thread-1] Initializing /data/stefan/001_q12.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 57 seconds Finished: SUCCESS