![[Jenkins]](/jenkins/static/d0200910/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 237 originally caused by: Started by upstream project "Trigger" build number 262 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins8653602930282505963.sh + '[' zip = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_37206_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:30:27,197 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:30:27,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:30:27,199 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:27,201 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:30:27,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:30:27,201 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:30:27,201 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:30:27,201 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:27,202 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:30:27,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:30:27,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:30:27,202 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:30:27,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:30:27,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:30:27,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:30:27,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:30:27,473 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:30:27,474 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:30:27,474 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:30:27,474 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:30:27,474 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:30:27,475 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:30:27,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 273 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-28 00:30:27,485] [main] java.version = 1.8.0_342 [testng] 00:30:27,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:30:27,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:30:27,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-28_00-30-27.log] [testng] 00:30:27,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-28 00:30:27,538] [main] testng.directory = /data [testng] [2024-10-28 00:30:27,539] [main] testng.configDirectory = /config [testng] [2024-10-28 00:30:27,551] [main] testng.multiplier = 1.0 [testng] [2024-10-28 00:30:27,551] [main] testng.in-memory = false [testng] [2024-10-28 00:30:27,551] [main] testng.allow-missing = false [testng] [2024-10-28 00:30:27,551] [main] user.language = fr [testng] [2024-10-28 00:30:27,551] [main] user.country = FR [testng] [2024-10-28 00:30:27,551] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-28 00:30:28,466] [main] ---------------------------------------- [testng] [2024-10-28 00:30:28,466] [main] Total files: 22 [testng] [2024-10-28 00:30:28,466] [main] Scan time: 0.915 s (41 ms/file) [testng] [2024-10-28 00:30:28,466] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 22 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-28 00:32:18,934] [pool-1-thread-1] Initializing /data/samples/sdub.zip: [testng] 00:32:18,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:32:18,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:18,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-28_00-32-18.log] [testng] 00:32:18,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@295adf9f - End of configuration. [testng] [2024-10-28 00:32:19,758] [pool-1-thread-12] Initializing /data/imagej/mri-stack.zip: [testng] 00:32:19,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:32:19,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:19,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-28_00-32-19.log] [testng] 00:32:19,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@510eb298 - End of configuration. [testng] [2024-10-28 00:32:21,819] [pool-1-thread-11] Initializing /data/imagej/hela-cells.zip: [testng] 00:32:21,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:32:21,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:21,820 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-28_00-32-21.log] [testng] 00:32:21,821 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71755b49 - End of configuration. [testng] [2024-10-28 00:32:25,251] [pool-1-thread-10] Initializing /data/imagej/watershed-animation.zip: [testng] 00:32:25,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:32:25,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:25,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-28_00-32-25.log] [testng] 00:32:25,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48ab5108 - End of configuration. [testng] [2024-10-28 00:32:28,296] [pool-1-thread-9] Initializing /data/imagej/4D-Stack(256x256x20x10).zip: [testng] 00:32:28,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:32:28,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:28,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-28_00-32-28.log] [testng] 00:32:28,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@543559b8 - End of configuration. [testng] [2024-10-28 00:32:38,704] [pool-1-thread-8] Initializing /data/imagej/gel-electrophoresis.zip: [testng] 00:32:38,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:32:38,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:38,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-28_00-32-38.log] [testng] 00:32:38,705 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60403989 - End of configuration. [testng] [2024-10-28 00:32:42,176] [pool-1-thread-7] Initializing /data/imagej/cheetah_256_8.tif.zip: [testng] 00:32:42,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:32:42,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:42,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-28_00-32-42.log] [testng] 00:32:42,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28048806 - End of configuration. [testng] [2024-10-28 00:32:45,919] [pool-1-thread-6] Initializing /data/imagej/xrays.zip: [testng] 00:32:45,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:32:45,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:45,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-28_00-32-45.log] [testng] 00:32:45,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@292c1925 - End of configuration. [testng] [2024-10-28 00:32:48,021] [pool-1-thread-5] Initializing /data/imagej/confocal-stack.zip: [testng] 00:32:48,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:32:48,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:48,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-28_00-32-48.log] [testng] 00:32:48,023 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dd919c1 - End of configuration. [testng] [2024-10-28 00:32:58,898] [pool-1-thread-4] Initializing /data/imagej/FluorescentCells.zip: [testng] 00:32:58,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:32:58,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:32:58,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-28_00-32-58.log] [testng] 00:32:58,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b3b401e - End of configuration. [testng] [2024-10-28 00:33:00,924] [pool-1-thread-3] Initializing /data/imagej/fat-cells.zip: [testng] 00:33:00,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:33:00,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:00,925 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-28_00-33-00.log] [testng] 00:33:00,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49ab3002 - End of configuration. [testng] [2024-10-28 00:33:05,033] [pool-1-thread-2] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip: [testng] 00:33:05,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:33:05,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:33:05,034 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-28_00-33-05.log] [testng] 00:33:05,034 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cc72bd7 - End of configuration. [testng] [2024-10-28 00:33:19,583] [pool-1-thread-1] Initializing /data/imagej/se3.zip: [testng] [2024-10-28 00:33:34,026] [pool-1-thread-6] Initializing /data/imagej/RatBrain.zip: [testng] [2024-10-28 00:33:42,419] [pool-1-thread-10] Initializing /data/imagej/blood-brain-barrier.zip: [testng] [2024-10-28 00:33:54,107] [pool-1-thread-12] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip: [testng] [2024-10-28 00:33:57,622] [pool-1-thread-4] Initializing /data/imagej/scala-media.zip: [testng] [2024-10-28 00:34:00,259] [pool-1-thread-7] Initializing /data/imagej/confocal-series.zip: [testng] [2024-10-28 00:34:13,822] [pool-1-thread-6] Initializing /data/imagej/3D_Chromosome.zip: [testng] [2024-10-28 00:34:15,493] [pool-1-thread-11] Initializing /data/imagej/flybrain.zip: [testng] [2024-10-28 00:34:25,299] [pool-1-thread-4] Initializing /data/imagej/m51.zip: [testng] [2024-10-28 00:34:31,906] [pool-1-thread-2] Initializing /data/samples/bat-cochlea-volume.zip: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1166, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 8 minutes 48 seconds Finished: SUCCESS