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Started by upstream project "BIOFORMATS-test-repo" build number 237 originally caused by: Started by upstream project "Trigger" build number 262 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins9679542830231663828.sh + '[' specs = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_37211_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:38:57,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:38:57,543 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:38:57,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:38:57,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:38:57,653 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:38:57,653 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:38:57,653 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:38:57,653 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:38:57,653 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1139b2f3 - End of configuration. [testng] 00:38:57,664 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@3f197a46 - Registering current configuration as safe fallback point [testng] 00:38:57,664 |-INFO in ch.qos.logback.classic.util.ContextInitializer@636be97c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 534 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-28 00:38:57,686] [main] java.version = 1.8.0_342 [testng] 00:38:57,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:38:57,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:38:57,740 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-28_00-38-57.log] [testng] 00:38:57,741 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-28 00:38:57,744] [main] testng.directory = /data [testng] [2024-10-28 00:38:57,744] [main] testng.configDirectory = /config [testng] [2024-10-28 00:38:57,769] [main] testng.multiplier = 1.0 [testng] [2024-10-28 00:38:57,769] [main] testng.in-memory = false [testng] [2024-10-28 00:38:57,769] [main] testng.allow-missing = false [testng] [2024-10-28 00:38:57,769] [main] user.language = fr [testng] [2024-10-28 00:38:57,769] [main] user.country = FR [testng] [2024-10-28 00:38:57,770] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-28 00:41:36,569] [main] ---------------------------------------- [testng] [2024-10-28 00:41:36,569] [main] Total files: 226 [testng] [2024-10-28 00:41:36,569] [main] Scan time: 158.799 s (702 ms/file) [testng] [2024-10-28 00:41:36,569] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-28 00:43:36,552] [pool-1-thread-1] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 00:43:36,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:43:36,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:36,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-28_00-43-36.log] [testng] 00:43:36,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bb67e34 - End of configuration. [testng] [2024-10-28 00:43:36,605] [pool-1-thread-12] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] 00:43:36,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:43:36,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:36,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-28_00-43-36.log] [testng] 00:43:36,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13713951 - End of configuration. [testng] [2024-10-28 00:43:36,901] [pool-1-thread-11] Initializing /data/fluoview/Sample_XT.tif: [testng] 00:43:36,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:43:36,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:36,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-28_00-43-36.log] [testng] 00:43:36,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14edffa6 - End of configuration. [testng] [2024-10-28 00:43:37,275] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] 00:43:37,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:43:37,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:37,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-28_00-43-37.log] [testng] 00:43:37,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fa098ef - End of configuration. [testng] [2024-10-28 00:43:37,380] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 00:43:37,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:43:37,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:37,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-28_00-43-37.log] [testng] 00:43:37,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@547be12 - End of configuration. [testng] [2024-10-28 00:43:37,984] [pool-1-thread-8] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 00:43:37,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:43:37,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:37,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-28_00-43-37.log] [testng] 00:43:37,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61fbdb7 - End of configuration. [testng] [2024-10-28 00:43:38,594] [pool-1-thread-7] Initializing /data/iplab/Blend_Final.IPL: [testng] 00:43:38,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:43:38,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:38,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-28_00-43-38.log] [testng] 00:43:38,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@155a8e81 - End of configuration. [testng] [2024-10-28 00:43:38,710] [pool-1-thread-6] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 00:43:38,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:43:38,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:38,711 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-28_00-43-38.log] [testng] 00:43:38,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@262d3262 - End of configuration. [testng] [2024-10-28 00:43:39,153] [pool-1-thread-5] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] 00:43:39,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:43:39,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:39,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-28_00-43-39.log] [testng] 00:43:39,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d6c16a3 - End of configuration. [testng] [2024-10-28 00:43:39,297] [pool-1-thread-4] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] 00:43:39,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:43:39,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:39,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-28_00-43-39.log] [testng] 00:43:39,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6af5bf2d - End of configuration. [testng] [2024-10-28 00:43:39,419] [pool-1-thread-3] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] 00:43:39,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:43:39,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:39,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-28_00-43-39.log] [testng] 00:43:39,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27fd4c2 - End of configuration. [testng] [2024-10-28 00:43:40,179] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 00:43:40,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:43:40,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:40,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-28_00-43-40.log] [testng] 00:43:40,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c0f79c7 - End of configuration. [testng] [2024-10-28 00:43:43,055] [pool-1-thread-7] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-10-28 00:43:43,728] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-10-28 00:43:43,821] [pool-1-thread-4] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2024-10-28 00:43:43,878] [pool-1-thread-10] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-10-28 00:43:44,538] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-10-28 00:43:46,167] [pool-1-thread-4] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-10-28 00:43:46,459] [pool-1-thread-1] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-10-28 00:43:46,748] [pool-1-thread-8] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-10-28 00:43:46,832] [pool-1-thread-12] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] [2024-10-28 00:43:47,353] [pool-1-thread-3] Initializing /data/iplab/Actin.IPL: [testng] [2024-10-28 00:43:47,430] [pool-1-thread-6] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-10-28 00:43:47,782] [pool-1-thread-9] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-10-28 00:43:47,837] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL: [testng] [2024-10-28 00:43:48,817] [pool-1-thread-1] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-10-28 00:43:49,514] [pool-1-thread-4] Initializing /data/iplab/Color Image.IPL: [testng] [2024-10-28 00:43:49,766] [pool-1-thread-9] Initializing /data/iplab/16Bit XRay.IPL: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 0 seconds Finished: SUCCESS