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Started by upstream project "BIOFORMATS-test-repo" build number 237 originally caused by: Started by upstream project "Trigger" build number 262 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins1621550057998610423.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_37340_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:12:28,631 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:12:28,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 04:12:28,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:12:28,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:12:28,634 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:12:28,634 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:12:28,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:12:28,634 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:12:28,635 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:12:28,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:12:28,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:12:28,635 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:12:28,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:12:28,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:12:28,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:12:28,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:12:28,882 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:12:28,882 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:12:28,882 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:12:28,883 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:12:28,883 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 04:12:28,883 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 04:12:28,883 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 248 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-28 04:12:28,893] [main] java.version = 1.8.0_342 [testng] 04:12:28,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:12:28,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:28,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-28_04-12-28.log] [testng] 04:12:28,940 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-10-28 04:12:28,942] [main] testng.directory = /data [testng] [2024-10-28 04:12:28,942] [main] testng.configDirectory = /config [testng] [2024-10-28 04:12:28,953] [main] testng.multiplier = 1.0 [testng] [2024-10-28 04:12:28,953] [main] testng.in-memory = false [testng] [2024-10-28 04:12:28,953] [main] testng.allow-missing = false [testng] [2024-10-28 04:12:28,953] [main] user.language = fr [testng] [2024-10-28 04:12:28,953] [main] user.country = FR [testng] [2024-10-28 04:12:28,953] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-10-28 04:12:43,072] [main] ---------------------------------------- [testng] [2024-10-28 04:12:43,072] [main] Total files: 31 [testng] [2024-10-28 04:12:43,072] [main] Scan time: 14.118 s (455 ms/file) [testng] [2024-10-28 04:12:43,072] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-28 04:12:59,878] [pool-1-thread-1] Initializing /data/david/000000_000001.jpx: [testng] 04:12:59,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:12:59,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:12:59,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-28_04-12-59.log] [testng] 04:12:59,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72ad93fe - End of configuration. [testng] [2024-10-28 04:13:00,388] [pool-1-thread-12] Initializing /data/david/C1R1_FOS.jp2: [testng] 04:13:00,389 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:13:00,390 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:13:00,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-28_04-13-00.log] [testng] 04:13:00,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b132de8 - End of configuration. [testng] [2024-10-28 04:13:00,833] [pool-1-thread-11] Initializing /data/venu/Multichannel 3.jp2: [testng] 04:13:00,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:13:00,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:13:00,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-28_04-13-00.log] [testng] 04:13:00,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4764c163 - End of configuration. [testng] [2024-10-28 04:13:01,321] [pool-1-thread-10] Initializing /data/big-images/2kx2k.jpf: [testng] 04:13:01,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:13:01,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:13:01,322 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-28_04-13-01.log] [testng] 04:13:01,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@201648b6 - End of configuration. [testng] [2024-10-28 04:13:01,744] [pool-1-thread-9] Initializing /data/kraig/head.jp2: [testng] 04:13:01,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:13:01,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:13:01,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-28_04-13-01.log] [testng] 04:13:01,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e05ad8e - End of configuration. [testng] [2024-10-28 04:13:02,135] [pool-1-thread-8] Initializing /data/vikram/Captured 5.jp2: [testng] 04:13:02,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:13:02,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:13:02,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-28_04-13-02.log] [testng] 04:13:02,137 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e0ac6d4 - End of configuration. [testng] [2024-10-28 04:13:02,635] [pool-1-thread-7] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] 04:13:02,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:13:02,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:13:02,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-28_04-13-02.log] [testng] 04:13:02,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32072265 - End of configuration. [testng] [2024-10-28 04:13:02,982] [pool-1-thread-6] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 04:13:02,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:13:02,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:13:02,983 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-28_04-13-02.log] [testng] 04:13:02,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e8b39e4 - End of configuration. [testng] [2024-10-28 04:13:03,797] [pool-1-thread-5] Initializing /data/vikram/Captured 2.jp2: [testng] 04:13:03,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:13:03,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:13:03,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-28_04-13-03.log] [testng] 04:13:03,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a244865 - End of configuration. [testng] [2024-10-28 04:13:04,477] [pool-1-thread-4] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] 04:13:04,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:13:04,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:13:04,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-28_04-13-04.log] [testng] 04:13:04,478 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40b300dc - End of configuration. [testng] [2024-10-28 04:13:04,925] [pool-1-thread-3] Initializing /data/vikram/Captured 1.jp2: [testng] 04:13:04,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:13:04,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:13:04,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-28_04-13-04.log] [testng] 04:13:04,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b9611c6 - End of configuration. [testng] [2024-10-28 04:13:05,337] [pool-1-thread-2] Initializing /data/misc/clown-rgb.jpc: [testng] 04:13:05,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:13:05,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:13:05,338 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-28_04-13-05.log] [testng] 04:13:05,338 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70b6864a - End of configuration. [testng] [2024-10-28 04:13:10,224] [pool-1-thread-2] Initializing /data/vikram/Captured 4.jp2: [testng] [2024-10-28 04:13:10,545] [pool-1-thread-3] Initializing /data/aryeh/flour 12.jp2: [testng] [2024-10-28 04:13:10,961] [pool-1-thread-5] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-10-28 04:13:11,250] [pool-1-thread-8] Initializing /data/venu/Multichannel 3a.jpg: [testng] [2024-10-28 04:13:11,407] [pool-1-thread-9] Initializing /data/david/cy5-tph.jp2: [testng] [2024-10-28 04:13:14,058] [pool-1-thread-4] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-10-28 04:13:15,211] [pool-1-thread-8] Initializing /data/frans/flower.jp2: [testng] [2024-10-28 04:13:15,799] [pool-1-thread-1] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2024-10-28 04:13:16,467] [pool-1-thread-2] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2024-10-28 04:13:16,836] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-10-28 04:13:18,155] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jbig: [testng] [2024-10-28 04:13:21,331] [pool-1-thread-11] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-10-28 04:13:22,316] [pool-1-thread-7] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-10-28 04:13:26,540] [pool-1-thread-10] Initializing /data/misc/clown-rgb.jp2: [testng] [2024-10-28 04:13:26,877] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] [2024-10-28 04:13:29,477] [pool-1-thread-1] Initializing /data/david/multichannel-2d test.jp2: [testng] [2024-10-28 04:13:32,030] [pool-1-thread-10] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] [2024-10-28 04:13:35,226] [pool-1-thread-2] Initializing /data/vikram/Captured 3.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 35 seconds Finished: SUCCESS