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Started by upstream project "BIOFORMATS-test-repo" build number 238 originally caused by: Started by upstream project "Trigger" build number 263 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins5387888965100839563.sh + '[' targa = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37386_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:36:02,260 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:36:02,262 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:36:02,262 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:36:02,263 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:36:02,263 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:36:02,264 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:36:02,264 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:36:02,264 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:36:02,265 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:36:02,265 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:36:02,265 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:36:02,266 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:36:02,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:36:02,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:36:02,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:36:02,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:36:02,475 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:36:02,475 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:36:02,475 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:36:02,475 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:36:02,476 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:36:02,476 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:36:02,476 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 211 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-29 00:36:02,486] [main] java.version = 11.0.16 [testng] 00:36:02,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:36:02,489 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:02,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-29_00-36-02.log] [testng] 00:36:02,535 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-29 00:36:02,537] [main] testng.directory = /data [testng] [2024-10-29 00:36:02,538] [main] testng.configDirectory = /config [testng] [2024-10-29 00:36:02,549] [main] testng.multiplier = 1.0 [testng] [2024-10-29 00:36:02,551] [main] testng.in-memory = false [testng] [2024-10-29 00:36:02,551] [main] testng.allow-missing = false [testng] [2024-10-29 00:36:02,551] [main] user.language = en [testng] [2024-10-29 00:36:02,551] [main] user.country = ${user.country} [testng] [2024-10-29 00:36:02,551] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-29 00:36:03,180] [main] ---------------------------------------- [testng] [2024-10-29 00:36:03,181] [main] Total files: 21 [testng] [2024-10-29 00:36:03,181] [main] Scan time: 0.629 s (29 ms/file) [testng] [2024-10-29 00:36:03,181] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-29 00:36:08,801] [pool-1-thread-1] Initializing /data/samples/XING_T24.TGA: [testng] 00:36:08,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:36:08,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:08,804 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-29_00-36-08.log] [testng] 00:36:08,804 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c58a21a - End of configuration. [testng] [2024-10-29 00:36:08,957] [pool-1-thread-12] Initializing /data/samples/FLAG_B24.TGA: [testng] 00:36:08,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:36:08,957 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:08,958 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-29_00-36-08.log] [testng] 00:36:08,958 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68c6274e - End of configuration. [testng] [2024-10-29 00:36:09,201] [pool-1-thread-11] Initializing /data/samples/MARBLES.TGA: [testng] 00:36:09,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:36:09,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:09,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-29_00-36-09.log] [testng] 00:36:09,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69fc83d6 - End of configuration. [testng] [2024-10-29 00:36:09,403] [pool-1-thread-10] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:36:09,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:36:09,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:09,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-29_00-36-09.log] [testng] 00:36:09,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5086bc88 - End of configuration. [testng] [2024-10-29 00:36:09,593] [pool-1-thread-9] Initializing /data/samples/UTC32.TGA: [testng] 00:36:09,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:36:09,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:09,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-29_00-36-09.log] [testng] 00:36:09,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25af6311 - End of configuration. [testng] [2024-10-29 00:36:09,776] [pool-1-thread-8] Initializing /data/samples/CCM8.TGA: [testng] 00:36:09,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:36:09,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:09,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-29_00-36-09.log] [testng] 00:36:09,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2efe4e30 - End of configuration. [testng] [2024-10-29 00:36:10,075] [pool-1-thread-7] Initializing /data/samples/UBW8.TGA: [testng] 00:36:10,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:36:10,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:10,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-29_00-36-10.log] [testng] 00:36:10,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@497c7d03 - End of configuration. [testng] [2024-10-29 00:36:10,268] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] 00:36:10,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:36:10,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:10,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-29_00-36-10.log] [testng] 00:36:10,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b07167f - End of configuration. [testng] [2024-10-29 00:36:10,477] [pool-1-thread-5] Initializing /data/samples/XING_B24.TGA: [testng] 00:36:10,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:36:10,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:10,479 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-29_00-36-10.log] [testng] 00:36:10,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a967501 - End of configuration. [testng] [2024-10-29 00:36:10,677] [pool-1-thread-4] Initializing /data/samples/FLAG_B16.TGA: [testng] 00:36:10,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:36:10,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:10,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-29_00-36-10.log] [testng] 00:36:10,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48b04f61 - End of configuration. [testng] [2024-10-29 00:36:10,877] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA: [testng] 00:36:10,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:36:10,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:10,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-29_00-36-10.log] [testng] 00:36:10,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15db29f6 - End of configuration. [testng] [2024-10-29 00:36:11,083] [pool-1-thread-2] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:36:11,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:36:11,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:36:11,085 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-29_00-36-11.log] [testng] 00:36:11,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@793d336a - End of configuration. [testng] [2024-10-29 00:36:14,880] [pool-1-thread-2] Initializing /data/samples/UTC16.TGA: [testng] [2024-10-29 00:36:15,051] [pool-1-thread-7] Initializing /data/samples/XING_B32.TGA: [testng] [2024-10-29 00:36:15,245] [pool-1-thread-9] Initializing /data/samples/FLAG_T32.TGA: [testng] [2024-10-29 00:36:15,454] [pool-1-thread-6] Initializing /data/samples/UCM8.TGA: [testng] [2024-10-29 00:36:15,661] [pool-1-thread-8] Initializing /data/samples/CBW8.TGA: [testng] [2024-10-29 00:36:15,877] [pool-1-thread-4] Initializing /data/samples/XING_T16.TGA: [testng] [2024-10-29 00:36:16,079] [pool-1-thread-3] Initializing /data/samples/XING_B16.TGA: [testng] [2024-10-29 00:36:16,257] [pool-1-thread-1] Initializing /data/samples/UTC24.TGA: [testng] [2024-10-29 00:36:16,453] [pool-1-thread-5] Initializing /data/samples/XING_T32.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS