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Started by upstream project "BIOFORMATS-test-repo" build number 238 originally caused by: Started by upstream project "Trigger" build number 263 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins9204964080361082641.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37437_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:41:26,349 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:41:26,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 01:41:26,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:41:26,352 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:41:26,353 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:41:26,353 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:41:26,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:41:26,353 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:41:26,354 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:41:26,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:41:26,355 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:41:26,355 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:41:26,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:41:26,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:41:26,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:41:26,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:41:26,574 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:41:26,574 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:41:26,574 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:41:26,574 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:41:26,574 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 01:41:26,575 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 01:41:26,575 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 221 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-29 01:41:26,583] [main] java.version = 11.0.16 [testng] 01:41:26,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:41:26,586 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:41:26,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-29_01-41-26.log] [testng] 01:41:26,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-29 01:41:26,635] [main] testng.directory = /data [testng] [2024-10-29 01:41:26,635] [main] testng.configDirectory = /config [testng] [2024-10-29 01:41:26,644] [main] testng.multiplier = 1.0 [testng] [2024-10-29 01:41:26,646] [main] testng.in-memory = false [testng] [2024-10-29 01:41:26,646] [main] testng.allow-missing = false [testng] [2024-10-29 01:41:26,646] [main] user.language = en [testng] [2024-10-29 01:41:26,646] [main] user.country = ${user.country} [testng] [2024-10-29 01:41:26,646] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-29 01:44:11,651] [main] ---------------------------------------- [testng] [2024-10-29 01:44:11,651] [main] Total files: 268 [testng] [2024-10-29 01:44:11,651] [main] Scan time: 165.005 s (615 ms/file) [testng] [2024-10-29 01:44:11,652] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-29 01:48:17,686] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] 01:48:17,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:48:17,688 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:17,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-29_01-48-17.log] [testng] 01:48:17,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fdf7747 - End of configuration. [testng] [2024-10-29 01:48:18,167] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] 01:48:18,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:48:18,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:18,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-29_01-48-18.log] [testng] 01:48:18,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6792c18 - End of configuration. [testng] [2024-10-29 01:48:18,476] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] 01:48:18,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:48:18,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:18,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-29_01-48-18.log] [testng] 01:48:18,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54935295 - End of configuration. [testng] [2024-10-29 01:48:19,501] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] 01:48:19,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:48:19,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:19,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-29_01-48-19.log] [testng] 01:48:19,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f89cb15 - End of configuration. [testng] [2024-10-29 01:48:19,782] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] 01:48:19,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:48:19,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:19,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-29_01-48-19.log] [testng] 01:48:19,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68d02bf7 - End of configuration. [testng] [2024-10-29 01:48:20,049] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] 01:48:20,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:48:20,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:20,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-29_01-48-20.log] [testng] 01:48:20,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cf5254 - End of configuration. [testng] [2024-10-29 01:48:20,393] [pool-1-thread-7] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] 01:48:20,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:48:20,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:20,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-29_01-48-20.log] [testng] 01:48:20,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ebd0634 - End of configuration. [testng] [2024-10-29 01:48:21,562] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] 01:48:21,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:48:21,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:21,563 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-29_01-48-21.log] [testng] 01:48:21,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6408f666 - End of configuration. [testng] [2024-10-29 01:48:21,880] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] 01:48:21,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:48:21,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:21,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-29_01-48-21.log] [testng] 01:48:21,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ffc5ec8 - End of configuration. [testng] [2024-10-29 01:48:22,154] [pool-1-thread-4] Initializing /data/steve/FITS/M13.fits: [testng] 01:48:22,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:48:22,154 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:22,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-29_01-48-22.log] [testng] 01:48:22,155 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39e4a151 - End of configuration. [testng] [2024-10-29 01:48:22,250] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] 01:48:22,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:48:22,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:22,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-29_01-48-22.log] [testng] 01:48:22,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@469eddd2 - End of configuration. [testng] [2024-10-29 01:48:23,455] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] 01:48:23,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:48:23,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:23,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-29_01-48-23.log] [testng] 01:48:23,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c90db86 - End of configuration. [testng] [2024-10-29 01:48:26,986] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-10-29 01:48:28,442] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-10-29 01:48:28,932] [pool-1-thread-9] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-10-29 01:48:30,080] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-10-29 01:48:31,187] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-10-29 01:48:31,511] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-10-29 01:48:32,816] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-10-29 01:48:37,009] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-10-29 01:48:37,306] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-10-29 01:48:37,898] [pool-1-thread-4] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-10-29 01:48:39,142] [pool-1-thread-1] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-10-29 01:48:40,409] [pool-1-thread-3] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-10-29 01:48:41,207] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-10-29 01:48:41,381] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-10-29 01:48:41,885] [pool-1-thread-2] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-10-29 01:48:45,113] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-10-29 01:48:46,546] [pool-1-thread-10] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-10-29 01:48:48,808] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-10-29 01:48:50,666] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-10-29 01:48:51,888] [pool-1-thread-12] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-10-29 01:48:55,625] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-10-29 01:48:56,251] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-10-29 01:48:57,410] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-10-29 01:48:59,717] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-10-29 01:48:59,984] [pool-1-thread-10] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-10-29 01:49:00,596] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-10-29 01:49:01,338] [pool-1-thread-9] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-10-29 01:49:02,009] [pool-1-thread-4] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-10-29 01:49:02,406] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-10-29 01:49:02,821] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-10-29 01:49:03,229] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-10-29 01:49:04,839] [pool-1-thread-7] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-10-29 01:49:06,206] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-10-29 01:49:07,554] [pool-1-thread-11] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-10-29 01:49:08,996] [pool-1-thread-5] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-10-29 01:49:10,429] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-10-29 01:49:10,783] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-10-29 01:49:10,949] [pool-1-thread-6] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-10-29 01:49:12,237] [pool-1-thread-8] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-10-29 01:49:13,968] [pool-1-thread-1] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-10-29 01:49:14,537] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-10-29 01:49:15,778] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-10-29 01:49:17,735] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-10-29 01:49:18,276] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-10-29 01:49:18,756] [pool-1-thread-7] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-10-29 01:49:20,010] [pool-1-thread-8] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-10-29 01:49:21,223] [pool-1-thread-12] Initializing /data/steve/FITS/M51.fits: [testng] [2024-10-29 01:49:22,288] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-10-29 01:49:23,631] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-10-29 01:49:25,102] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-10-29 01:49:27,126] [pool-1-thread-12] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-10-29 01:49:27,792] [pool-1-thread-6] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-10-29 01:49:28,220] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-10-29 01:49:29,611] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-10-29 01:49:30,891] [pool-1-thread-10] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-10-29 01:49:31,671] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-10-29 01:49:32,052] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-10-29 01:49:33,099] [pool-1-thread-7] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-10-29 01:49:34,293] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-10-29 01:49:34,693] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-10-29 01:49:35,090] [pool-1-thread-3] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-10-29 01:49:36,452] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-10-29 01:49:36,915] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-10-29 01:49:37,242] [pool-1-thread-11] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-10-29 01:49:38,617] [pool-1-thread-2] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-10-29 01:49:38,763] [pool-1-thread-4] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-10-29 01:49:40,606] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-10-29 01:49:41,082] [pool-1-thread-10] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-10-29 01:49:41,387] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-10-29 01:49:41,872] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-10-29 01:49:42,257] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-10-29 01:49:42,768] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-10-29 01:49:44,142] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-10-29 01:49:44,805] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-10-29 01:49:45,406] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-10-29 01:49:46,576] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-10-29 01:49:47,757] [pool-1-thread-7] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-10-29 01:49:48,319] [pool-1-thread-4] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-10-29 01:49:49,369] [pool-1-thread-10] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-10-29 01:49:49,692] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-10-29 01:49:49,848] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-10-29 01:49:50,156] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-10-29 01:49:50,867] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-10-29 01:49:51,853] [pool-1-thread-12] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-10-29 01:49:53,632] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-10-29 01:49:54,753] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-10-29 01:49:55,021] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-10-29 01:49:55,471] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-10-29 01:49:56,597] [pool-1-thread-10] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-10-29 01:49:57,189] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-10-29 01:49:57,373] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-10-29 01:49:57,810] [pool-1-thread-9] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-10-29 01:49:58,183] [pool-1-thread-5] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-10-29 01:49:59,928] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-10-29 01:50:00,545] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-10-29 01:50:00,988] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-10-29 01:50:01,364] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-10-29 01:50:02,056] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-10-29 01:50:02,195] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-10-29 01:50:02,731] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-10-29 01:50:03,021] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-10-29 01:50:03,303] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-10-29 01:50:04,001] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-10-29 01:50:05,314] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-10-29 01:50:06,595] [pool-1-thread-9] Initializing /data/steve/FITS/M104.fits: [testng] [2024-10-29 01:50:06,694] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-10-29 01:50:07,207] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-10-29 01:50:07,586] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-10-29 01:50:07,931] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-10-29 01:50:08,200] [pool-1-thread-5] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-10-29 01:50:09,162] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-10-29 01:50:09,685] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-10-29 01:50:10,014] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-10-29 01:50:11,030] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-10-29 01:50:12,035] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-10-29 01:50:12,855] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-10-29 01:50:13,226] [pool-1-thread-6] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-10-29 01:50:14,273] [pool-1-thread-5] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-10-29 01:50:14,693] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-10-29 01:50:14,970] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-10-29 01:50:15,736] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-10-29 01:50:16,354] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-10-29 01:50:16,687] [pool-1-thread-3] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-10-29 01:50:17,621] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-10-29 01:50:18,235] [pool-1-thread-9] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-10-29 01:50:19,702] [pool-1-thread-4] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-10-29 01:50:20,722] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-10-29 01:50:21,102] [pool-1-thread-1] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-10-29 01:50:21,529] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-10-29 01:50:21,822] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-10-29 01:50:22,020] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-10-29 01:50:22,434] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-10-29 01:50:23,426] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-10-29 01:50:24,000] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-10-29 01:50:24,355] [pool-1-thread-10] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-10-29 01:50:25,334] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-10-29 01:50:25,642] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-10-29 01:50:26,098] [pool-1-thread-1] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-10-29 01:50:26,441] [pool-1-thread-6] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-10-29 01:50:26,801] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-10-29 01:50:27,117] [pool-1-thread-3] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-10-29 01:50:27,394] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-10-29 01:50:27,722] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-10-29 01:50:28,004] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-10-29 01:50:28,395] [pool-1-thread-12] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-10-29 01:50:29,762] [pool-1-thread-8] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-10-29 01:50:30,271] [pool-1-thread-11] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-10-29 01:50:30,876] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 minutes 11 seconds Finished: SUCCESS