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Started by upstream project "BIOFORMATS-test-repo" build number 238 originally caused by: Started by upstream project "Trigger" build number 263 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins2094529184446355968.sh + '[' cellr = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37498_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 03:46:03,955 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:46:03,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 03:46:03,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:46:03,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:46:03,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:46:03,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:46:03,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:46:03,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:46:03,959 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:46:03,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:46:03,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:46:03,960 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:46:04,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:46:04,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:46:04,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:46:04,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:46:04,162 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:46:04,162 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:46:04,162 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:46:04,163 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:46:04,163 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 03:46:04,164 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 03:46:04,164 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 205 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-29 03:46:04,176] [main] java.version = 11.0.16 [testng] 03:46:04,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:46:04,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:46:04,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-29_03-46-04.log] [testng] 03:46:04,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-10-29 03:46:04,244] [main] testng.directory = /data [testng] [2024-10-29 03:46:04,244] [main] testng.configDirectory = /config [testng] [2024-10-29 03:46:04,258] [main] testng.multiplier = 1.0 [testng] [2024-10-29 03:46:04,259] [main] testng.in-memory = false [testng] [2024-10-29 03:46:04,260] [main] testng.allow-missing = false [testng] [2024-10-29 03:46:04,260] [main] user.language = en [testng] [2024-10-29 03:46:04,260] [main] user.country = ${user.country} [testng] [2024-10-29 03:46:04,260] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-29 03:47:31,389] [main] ---------------------------------------- [testng] [2024-10-29 03:47:31,390] [main] Total files: 256 [testng] [2024-10-29 03:47:31,390] [main] Scan time: 87.129 s (340 ms/file) [testng] [2024-10-29 03:47:31,390] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-29 03:50:58,521] [pool-1-thread-1] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb: [testng] 03:50:58,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:50:58,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:50:58,523 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-29_03-50-58.log] [testng] 03:50:58,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4df637c7 - End of configuration. [testng] [2024-10-29 03:51:00,892] [pool-1-thread-12] Initializing /data/qa-17107/example2/example2_d.mtb: [testng] 03:51:00,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:51:00,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:00,893 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-29_03-51-00.log] [testng] 03:51:00,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ff1876f - End of configuration. [testng] [2024-10-29 03:51:01,486] [pool-1-thread-11] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb: [testng] 03:51:01,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:51:01,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:01,486 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-29_03-51-01.log] [testng] 03:51:01,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@755e324c - End of configuration. [testng] [2024-10-29 03:51:01,988] [pool-1-thread-10] Initializing /data/kees/Mariaelena_d.mtb: [testng] 03:51:01,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:51:01,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:01,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-29_03-51-01.log] [testng] 03:51:01,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5713e0a4 - End of configuration. [testng] [2024-10-29 03:51:03,609] [pool-1-thread-9] Initializing /data/viktorie/090902/090902_d.mtb: [testng] 03:51:03,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:51:03,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:03,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-29_03-51-03.log] [testng] 03:51:03,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f5b1645 - End of configuration. [testng] [2024-10-29 03:51:04,286] [pool-1-thread-8] Initializing /data/viktorie/test/test_d.mtb: [testng] 03:51:04,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:51:04,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:04,288 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-29_03-51-04.log] [testng] 03:51:04,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b0cf3b8 - End of configuration. [testng] [2024-10-29 03:51:04,836] [pool-1-thread-7] Initializing /data/viktorie/2Channels.tif: [testng] 03:51:04,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:51:04,837 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:04,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-29_03-51-04.log] [testng] 03:51:04,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b4167d8 - End of configuration. [testng] [2024-10-29 03:51:06,209] [pool-1-thread-6] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb: [testng] 03:51:06,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:51:06,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:06,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-29_03-51-06.log] [testng] 03:51:06,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@205d1a49 - End of configuration. [testng] [2024-10-29 03:51:07,105] [pool-1-thread-5] Initializing /data/colin/08-10-09/08-10-09_d.mtb: [testng] 03:51:07,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:51:07,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:07,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-29_03-51-07.log] [testng] 03:51:07,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e3ad415 - End of configuration. [testng] [2024-10-29 03:51:11,994] [pool-1-thread-4] Initializing /data/qa-17107/plain/Plain_d.mtb: [testng] 03:51:11,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:51:11,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:11,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-29_03-51-11.log] [testng] 03:51:11,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eef25c2 - End of configuration. [testng] [2024-10-29 03:51:12,664] [pool-1-thread-3] Initializing /data/clare/set_27_on_d.mtb: [testng] 03:51:12,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:51:12,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:12,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-29_03-51-12.log] [testng] 03:51:12,666 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c58ac86 - End of configuration. [testng] [2024-10-29 03:51:13,766] [pool-1-thread-2] Initializing /data/colin/07-06-21/07-06-21_d.mtb: [testng] 03:51:13,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:51:13,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:13,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-29_03-51-13.log] [testng] 03:51:13,768 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ee2d933 - End of configuration. [testng] [2024-10-29 03:51:22,462] [pool-1-thread-7] Initializing /data/viktorie/Structure.jpg: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 54 seconds Finished: SUCCESS