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Started by upstream project "BIOFORMATS-test-repo" build number 239 originally caused by: Started by upstream project "Trigger" build number 264 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins18134245529854278612.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37554_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:51:01,246 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:51:01,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:51:01,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:51:01,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:51:01,249 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:51:01,249 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:51:01,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:51:01,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:51:01,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:51:01,250 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:51:01,251 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:51:01,251 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:51:01,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:51:01,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:51:01,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:51:01,425 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:51:01,430 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:51:01,430 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:51:01,430 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:51:01,430 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:51:01,430 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:51:01,431 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:51:01,432 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 182 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-30 00:51:01,440] [main] java.version = 17.0.2 [testng] 00:51:01,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:51:01,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:01,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-30_00-51-01.log] [testng] 00:51:01,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-30 00:51:01,484] [main] testng.directory = /data [testng] [2024-10-30 00:51:01,484] [main] testng.configDirectory = /config [testng] [2024-10-30 00:51:01,492] [main] testng.multiplier = 1.0 [testng] [2024-10-30 00:51:01,493] [main] testng.in-memory = false [testng] [2024-10-30 00:51:01,493] [main] testng.allow-missing = false [testng] [2024-10-30 00:51:01,493] [main] user.language = en [testng] [2024-10-30 00:51:01,493] [main] user.country = ${user.country} [testng] [2024-10-30 00:51:01,493] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-30 00:53:46,800] [main] ---------------------------------------- [testng] [2024-10-30 00:53:46,801] [main] Total files: 259 [testng] [2024-10-30 00:53:46,801] [main] Scan time: 165.307 s (638 ms/file) [testng] [2024-10-30 00:53:46,801] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-30 00:59:02,589] [pool-1-thread-1] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] 00:59:02,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:59:02,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:02,591 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-30_00-59-02.log] [testng] 00:59:02,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@211a83e9 - End of configuration. [testng] [2024-10-30 00:59:08,322] [pool-1-thread-12] Initializing /data/yasunori/series_1.oib: [testng] 00:59:08,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:59:08,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:08,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-30_00-59-08.log] [testng] 00:59:08,324 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32645d12 - End of configuration. [testng] [2024-10-30 00:59:08,580] [pool-1-thread-11] Initializing /data/simon/never_worked.oib: [testng] 00:59:08,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:59:08,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:08,581 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-30_00-59-08.log] [testng] 00:59:08,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79714da3 - End of configuration. [testng] [2024-10-30 00:59:08,726] [pool-1-thread-10] Initializing /data/satoshi/60x_5x_1.oif: [testng] 00:59:08,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:59:08,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:08,727 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-30_00-59-08.log] [testng] 00:59:08,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d0197e - End of configuration. [testng] [2024-10-30 00:59:08,959] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] 00:59:08,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:59:08,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:08,959 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-30_00-59-08.log] [testng] 00:59:08,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b8d9f03 - End of configuration. [testng] [2024-10-30 00:59:09,049] [pool-1-thread-8] Initializing /data/david/Image0016.oif: [testng] 00:59:09,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:59:09,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:09,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-30_00-59-09.log] [testng] 00:59:09,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fefc15a - End of configuration. [testng] [2024-10-30 00:59:09,229] [pool-1-thread-7] Initializing /data/brian/PA-GFP-3.oib: [testng] 00:59:09,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:59:09,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:09,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-30_00-59-09.log] [testng] 00:59:09,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@275be4c1 - End of configuration. [testng] [2024-10-30 00:59:09,620] [pool-1-thread-6] Initializing /data/stefan/cytosol_03e.oib: [testng] 00:59:09,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:59:09,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:09,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-30_00-59-09.log] [testng] 00:59:09,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@196ae177 - End of configuration. [testng] [2024-10-30 00:59:10,273] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif: [testng] 00:59:10,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:59:10,273 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:10,274 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-30_00-59-10.log] [testng] 00:59:10,275 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44859c38 - End of configuration. [testng] [2024-10-30 00:59:10,509] [pool-1-thread-4] Initializing /data/brian/CFP-GFP2.oib: [testng] 00:59:10,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:59:10,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:10,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-30_00-59-10.log] [testng] 00:59:10,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@88b8aa - End of configuration. [testng] [2024-10-30 00:59:10,779] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oif: [testng] 00:59:10,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:59:10,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:10,780 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-30_00-59-10.log] [testng] 00:59:10,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@377b66b4 - End of configuration. [testng] [2024-10-30 00:59:12,979] [pool-1-thread-2] Initializing /data/glen/Null file/test no change.oif: [testng] 00:59:12,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:59:12,979 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:59:12,980 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-30_00-59-12.log] [testng] 00:59:12,980 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3486388a - End of configuration. [testng] [2024-10-30 00:59:16,359] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-10-30 00:59:16,819] [pool-1-thread-11] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-10-30 00:59:17,381] [pool-1-thread-4] Initializing /data/molly/11OCT7.OIF: [testng] [2024-10-30 00:59:21,062] [pool-1-thread-12] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-10-30 00:59:22,432] [pool-1-thread-7] Initializing /data/marc/V0606L.oib: [testng] [2024-10-30 00:59:24,677] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-10-30 00:59:25,964] [pool-1-thread-11] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-10-30 00:59:27,243] [pool-1-thread-9] Initializing /data/glen/simulstack.oib: [testng] [2024-10-30 00:59:28,605] [pool-1-thread-11] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-10-30 00:59:29,510] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-10-30 00:59:30,793] [pool-1-thread-2] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-10-30 00:59:31,381] [pool-1-thread-9] Initializing /data/marc/V0606J.oib: [testng] [2024-10-30 00:59:34,253] [pool-1-thread-12] Initializing /data/glen/simulstack.oif: [testng] [2024-10-30 00:59:35,265] [pool-1-thread-2] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-10-30 00:59:35,601] [pool-1-thread-6] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-10-30 00:59:37,047] [pool-1-thread-7] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-10-30 00:59:38,397] [pool-1-thread-6] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-10-30 00:59:42,877] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-10-30 00:59:46,442] [pool-1-thread-8] Initializing /data/glen/singlesimul.oib: [testng] [2024-10-30 00:59:47,878] [pool-1-thread-9] Initializing /data/glen/seqlinestack.oib: [testng] [2024-10-30 00:59:48,538] [pool-1-thread-8] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-10-30 00:59:50,545] [pool-1-thread-8] Initializing /data/allan/62909#1.oib: [testng] [2024-10-30 00:59:51,214] [pool-1-thread-2] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-10-30 00:59:51,521] [pool-1-thread-9] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-10-30 00:59:52,574] [pool-1-thread-8] Initializing /data/tom/zseries-test.oib: [testng] [2024-10-30 00:59:54,441] [pool-1-thread-9] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-10-30 00:59:54,964] [pool-1-thread-2] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-10-30 00:59:59,933] [pool-1-thread-8] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-10-30 01:00:00,703] [pool-1-thread-9] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-10-30 01:00:02,980] [pool-1-thread-8] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-10-30 01:00:03,944] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-10-30 01:00:05,930] [pool-1-thread-6] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-10-30 01:00:06,249] [pool-1-thread-8] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-10-30 01:00:07,038] [pool-1-thread-9] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-10-30 01:00:09,008] [pool-1-thread-6] Initializing /data/molly/11OCT10.OIF: [testng] [2024-10-30 01:00:16,832] [pool-1-thread-9] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-10-30 01:00:17,325] [pool-1-thread-5] Initializing /data/molly/11OCT6.OIF: [testng] [2024-10-30 01:00:24,433] [pool-1-thread-9] Initializing /data/glen/singleseqframe.oif: [testng] [2024-10-30 01:00:24,865] [pool-1-thread-8] Initializing /data/molly/11OCT4.OIF: [testng] [2024-10-30 01:00:33,428] [pool-1-thread-10] Initializing /data/molly/11OCT8.OIF: [testng] [2024-10-30 01:00:49,181] [pool-1-thread-9] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-10-30 01:00:51,711] [pool-1-thread-9] Initializing /data/david/Image0016.oib: [testng] [2024-10-30 01:00:53,731] [pool-1-thread-9] Initializing /data/glen/singleseqline.oif: [testng] [2024-10-30 01:01:13,007] [pool-1-thread-9] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-10-30 01:01:15,078] [pool-1-thread-9] Initializing /data/aryeh/control_test.oib: [testng] [2024-10-30 01:01:36,318] [pool-1-thread-9] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-10-30 01:01:39,996] [pool-1-thread-9] Initializing /data/jae/Image0001.oib: [testng] [2024-10-30 01:01:43,201] [pool-1-thread-9] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-10-30 01:01:47,585] [pool-1-thread-9] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-10-30 01:02:02,113] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-10-30 01:02:04,356] [pool-1-thread-9] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-10-30 01:02:05,100] [pool-1-thread-9] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-10-30 01:02:07,509] [pool-1-thread-9] Initializing /data/johannes/step5b.bmp: [testng] [2024-10-30 01:02:09,101] [pool-1-thread-9] Initializing /data/molly/11OCT9.OIF: [testng] [2024-10-30 01:02:47,007] [pool-1-thread-11] Initializing /data/johannes/step4.bmp: [testng] [2024-10-30 01:02:48,498] [pool-1-thread-11] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-10-30 01:02:50,815] [pool-1-thread-11] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-10-30 01:02:55,102] [pool-1-thread-11] Initializing /data/tom/RGB-1.avi: [testng] [2024-10-30 01:02:57,154] [pool-1-thread-11] Initializing /data/yoshihito/XY.oif: [testng] [2024-10-30 01:03:08,145] [pool-1-thread-11] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-10-30 01:03:10,188] [pool-1-thread-11] Initializing /data/glen/4205basal106072.oif: [testng] [2024-10-30 01:05:31,109] [pool-1-thread-12] Initializing /data/sten/01.oib: [testng] [2024-10-30 01:05:34,069] [pool-1-thread-12] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-10-30 01:05:37,525] [pool-1-thread-12] Initializing /data/molly/11OCT3.OIF: [testng] [2024-10-30 01:06:19,321] [pool-1-thread-7] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-10-30 01:06:22,246] [pool-1-thread-7] Initializing /data/glen/singlesimul.oif: [testng] [2024-10-30 01:06:50,164] [pool-1-thread-7] Initializing /data/simon/used_to_work.oib: [testng] [2024-10-30 01:06:54,337] [pool-1-thread-7] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-10-30 01:06:56,967] [pool-1-thread-7] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-10-30 01:07:00,328] [pool-1-thread-7] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-10-30 01:07:03,007] [pool-1-thread-7] Initializing /data/aryeh/1h.oib: [testng] [2024-10-30 01:07:09,231] [pool-1-thread-7] Initializing /data/glen/111407.oif: [testng] [2024-10-30 01:07:24,743] [pool-1-thread-4] Initializing /data/chris/missegragation-15.oib: [testng] [2024-10-30 01:07:28,061] [pool-1-thread-4] Initializing /data/glen/singleseqframe.oib: [testng] [2024-10-30 01:07:30,648] [pool-1-thread-4] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-10-30 01:09:39,165] [pool-1-thread-8] Initializing /data/monica/Image0056.oif: [testng] [2024-10-30 01:10:03,274] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-10-30 01:10:06,192] [pool-1-thread-8] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-10-30 01:10:08,932] [pool-1-thread-8] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-10-30 01:10:11,824] [pool-1-thread-8] Initializing /data/yoshihito/XY.oib: [testng] [2024-10-30 01:10:13,965] [pool-1-thread-8] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-10-30 01:10:40,147] [pool-1-thread-3] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-10-30 01:11:02,054] [pool-1-thread-10] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-10-30 01:11:24,302] [pool-1-thread-10] Initializing /data/christian/20min.oif: [testng] [2024-10-30 01:11:31,577] [pool-1-thread-5] Initializing /data/glen/Null file/test change.oif: [testng] [2024-10-30 01:11:48,498] [pool-1-thread-10] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-10-30 01:11:54,015] [pool-1-thread-10] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-10-30 01:12:05,009] [pool-1-thread-2] Initializing /data/glen/notsaturated.oib: [testng] [2024-10-30 01:12:10,670] [pool-1-thread-5] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-10-30 01:12:12,441] [pool-1-thread-2] Initializing /data/brian/Kaede15.oib: [testng] [2024-10-30 01:12:18,830] [pool-1-thread-2] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-10-30 01:12:45,824] [pool-1-thread-5] Initializing /data/glen/Image0002.oif: [testng] [2024-10-30 01:13:34,695] [pool-1-thread-8] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-10-30 01:13:36,207] [pool-1-thread-8] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-10-30 01:13:40,994] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-10-30 01:13:46,778] [pool-1-thread-8] Initializing /data/brian/lambda02nm.oib: [testng] [2024-10-30 01:13:52,028] [pool-1-thread-8] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-10-30 01:13:57,018] [pool-1-thread-8] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-10-30 01:14:01,797] [pool-1-thread-8] Initializing /data/michael/CELL3.oib: [testng] [2024-10-30 01:14:05,450] [pool-1-thread-8] Initializing /data/brian/FLIP.oib: [testng] [2024-10-30 01:14:11,302] [pool-1-thread-8] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-10-30 01:14:16,205] [pool-1-thread-8] Initializing /data/johannes/step1.bmp: [testng] [2024-10-30 01:14:18,535] [pool-1-thread-8] Initializing /data/molly/11OCT5.OIF: [testng] [2024-10-30 01:14:30,463] [pool-1-thread-10] Initializing /data/glen/singleseqline.oib: [testng] [2024-10-30 01:14:33,861] [pool-1-thread-10] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-10-30 01:14:46,696] [pool-1-thread-2] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-10-30 01:14:51,002] [pool-1-thread-2] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-10-30 01:14:53,203] [pool-1-thread-4] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-10-30 01:14:54,830] [pool-1-thread-2] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-10-30 01:15:01,174] [pool-1-thread-4] Initializing /data/johannes/step4b.bmp: [testng] [2024-10-30 01:15:03,054] [pool-1-thread-4] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-10-30 01:15:44,644] [pool-1-thread-4] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-10-30 01:15:49,879] [pool-1-thread-4] Initializing /data/molly/11OCT11.OIF: [testng] [2024-10-30 01:16:16,900] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-10-30 01:16:21,494] [pool-1-thread-6] Initializing /data/karl/Image0009.oib: [testng] [2024-10-30 01:16:24,248] [pool-1-thread-6] Initializing /data/molly/11OCT2.OIF: [testng] [2024-10-30 01:17:23,557] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-10-30 01:17:27,420] [pool-1-thread-7] Initializing /data/johannes/step3.bmp: [testng] [2024-10-30 01:17:29,292] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-10-30 01:17:34,328] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-10-30 01:17:39,155] [pool-1-thread-7] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-10-30 01:17:43,275] [pool-1-thread-7] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-10-30 01:18:55,811] [pool-1-thread-11] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-10-30 01:18:58,186] [pool-1-thread-3] Initializing /data/glen/notsaturated.oif: [testng] [2024-10-30 01:19:05,762] [pool-1-thread-11] Initializing /data/kay/IM2pg.oib: [testng] [2024-10-30 01:19:11,588] [pool-1-thread-11] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-10-30 01:19:37,570] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-10-30 01:19:42,165] [pool-1-thread-11] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-10-30 01:29:06,289] [pool-1-thread-3] Initializing /data/pedro/plv-test.oib: [testng] [2024-10-30 01:29:11,331] [pool-1-thread-3] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-10-30 01:29:17,134] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-10-30 01:29:24,093] [pool-1-thread-3] Initializing /data/johannes/step2.bmp: [testng] 02:41:02,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:41:02,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:41:02,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-30_02-41-02.log] [testng] 02:41:02,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f467bb9 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 110 minutes 3 seconds Finished: SUCCESS