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Started by upstream project "BIOFORMATS-test-repo" build number 29 originally caused by: Started by upstream project "Trigger" build number 32 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins3383316041892839315.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_3756_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:20:25,326 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:25,328 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 01:20:25,328 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:25,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:25,329 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:25,329 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:25,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:25,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:25,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:25,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:25,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:25,331 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:25,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:25,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:25,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:25,549 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:25,556 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:25,556 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:25,556 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:25,557 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:25,557 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 01:20:25,558 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 01:20:25,558 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 228 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-10 01:20:25,569] [main] java.version = 17.0.2 [testng] 01:20:25,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:25,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:25,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-10_01-20-25.log] [testng] 01:20:25,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-04-10 01:20:25,634] [main] testng.directory = /data [testng] [2024-04-10 01:20:25,634] [main] testng.configDirectory = /config [testng] [2024-04-10 01:20:25,646] [main] testng.multiplier = 1.0 [testng] [2024-04-10 01:20:25,647] [main] testng.in-memory = false [testng] [2024-04-10 01:20:25,647] [main] testng.allow-missing = false [testng] [2024-04-10 01:20:25,647] [main] user.language = en [testng] [2024-04-10 01:20:25,647] [main] user.country = ${user.country} [testng] [2024-04-10 01:20:25,648] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-10 01:20:41,424] [main] ---------------------------------------- [testng] [2024-04-10 01:20:41,424] [main] Total files: 4424 [testng] [2024-04-10 01:20:41,425] [main] Scan time: 15.776 s (3 ms/file) [testng] [2024-04-10 01:20:41,425] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 721 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-10 01:22:37,107] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z023.tif: [testng] 01:22:37,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:22:37,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:37,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-10_01-22-37.log] [testng] 01:22:37,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@735104fd - End of configuration. [testng] [2024-04-10 01:22:37,149] [pool-1-thread-12] Initializing /data/sub-resolution/Leica-1/Leica-1-subifds.tiff: [testng] 01:22:37,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:22:37,149 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:37,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-10_01-22-37.log] [testng] 01:22:37,150 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29c7d154 - End of configuration. [testng] [2024-04-10 01:22:37,190] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs004.TIF: [testng] 01:22:37,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:37,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:37,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-10_01-22-37.log] [testng] 01:22:37,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ffdfd6d - End of configuration. [testng] [2024-04-10 01:22:37,234] [pool-1-thread-10] Initializing /data/josiah/cell-Z28.C1.tiff: [testng] 01:22:37,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:37,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:37,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-10_01-22-37.log] [testng] 01:22:37,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@701ab1a3 - End of configuration. [testng] [2024-04-10 01:22:37,266] [pool-1-thread-9] Initializing /data/josiah/cell-Z6.C0.tiff: [testng] 01:22:37,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:37,266 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:37,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-10_01-22-37.log] [testng] 01:22:37,267 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74534095 - End of configuration. [testng] [2024-04-10 01:22:37,296] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0248.TIF: [testng] 01:22:37,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:37,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:37,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-10_01-22-37.log] [testng] 01:22:37,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@445d15ae - End of configuration. [testng] [2024-04-10 01:22:37,352] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z003.tif: [testng] 01:22:37,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:37,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:37,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-10_01-22-37.log] [testng] 01:22:37,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2028a983 - End of configuration. [testng] [2024-04-10 01:22:37,382] [pool-1-thread-6] Initializing /data/imagesc-50416/_Fadeh_Alonzy_OD_Lower__M5_A8_F950nmD_I022_20130424115201.tiff: [testng] 01:22:37,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:37,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:37,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-10_01-22-37.log] [testng] 01:22:37,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3512dae3 - End of configuration. [testng] [2024-04-10 01:22:37,432] [pool-1-thread-5] Initializing /data/ascb/FND-12_PorterFranziniSarcoplasmic_4800.tif: [testng] 01:22:37,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:37,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:37,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-10_01-22-37.log] [testng] 01:22:37,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fe126e6 - End of configuration. [testng] [2024-04-10 01:22:37,481] [pool-1-thread-4] Initializing /data/marc/ball48_original_10x.tif: [testng] 01:22:37,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:37,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:37,483 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-10_01-22-37.log] [testng] 01:22:37,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39c3abd5 - End of configuration. [testng] [2024-04-10 01:22:37,507] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z004.tif: [testng] 01:22:37,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:37,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:37,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-10_01-22-37.log] [testng] 01:22:37,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e543e03 - End of configuration. [testng] [2024-04-10 01:22:37,544] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z001.tif: [testng] 01:22:37,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:37,545 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:37,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-10_01-22-37.log] [testng] 01:22:37,546 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27515586 - End of configuration. [testng] [2024-04-10 01:22:39,467] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z032.tif: [testng] [2024-04-10 01:22:39,492] [pool-1-thread-7] Initializing /data/curtis/test3.tiff: [testng] [2024-04-10 01:22:39,518] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z040.tif: [testng] [2024-04-10 01:22:39,546] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z063.tif: [testng] [2024-04-10 01:22:39,852] [pool-1-thread-9] Initializing /data/josiah/cell-Z5.C1.tiff: [testng] [2024-04-10 01:22:39,884] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z008.tif: [testng] [2024-04-10 01:22:39,915] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x48.tiff: [testng] [2024-04-10 01:22:40,175] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z037.tif: [testng] [2024-04-10 01:22:40,205] [pool-1-thread-8] Initializing /data/ascb/CYT-57_HowellClatharinDetails_4800.tif: [testng] [2024-04-10 01:22:40,308] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C0_Z004.tif: [testng] [2024-04-10 01:22:40,443] [pool-1-thread-1] Initializing /data/brian/retina/retina_C0_Z009.tif: [testng] [2024-04-10 01:22:40,473] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z019.tif: [testng] [2024-04-10 01:22:40,508] [pool-1-thread-2] Initializing /data/big-images/2kx2k.tif: [testng] [2024-04-10 01:22:40,576] [pool-1-thread-11] Initializing /data/stephane/Fluid Dynamics.tif: [testng] [2024-04-10 01:22:40,683] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0225.TIF: [testng] [2024-04-10 01:22:40,800] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z021.tif: [testng] [2024-04-10 01:22:40,962] [pool-1-thread-6] Initializing /data/damian/09m.tiff: [testng] [2024-04-10 01:22:41,046] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z024.tif: [testng] [2024-04-10 01:22:41,138] [pool-1-thread-11] Initializing /data/josiah/cell-Z37.C1.tiff: [testng] [2024-04-10 01:22:41,203] [pool-1-thread-1] Initializing /data/ascb/FND-26_PaladeGlycogen_4800.tif: [testng] [2024-04-10 01:22:41,249] [pool-1-thread-3] Initializing /data/josh/3Aa_C2_TP1.tiff: [testng] [2024-04-10 01:22:41,368] [pool-1-thread-9] Initializing /data/samples/cielab/SKI_TC803_rel.tif: [testng] [2024-04-10 01:22:41,494] [pool-1-thread-4] Initializing /data/misc/mri-old.mov: [testng] [2024-04-10 01:22:41,566] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z012.tif: [testng] [2024-04-10 01:22:41,740] [pool-1-thread-7] Initializing /data/caroline/1828_L2_series_1.tif: [testng] [2024-04-10 01:22:41,798] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0224.TIF: [testng] [2024-04-10 01:22:41,951] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z028.tif: [testng] [2024-04-10 01:22:41,975] [pool-1-thread-11] Initializing /data/samples/melissa/imagej-4gb/4gb-imagej.tif: [testng] [2024-04-10 01:22:42,218] [pool-1-thread-10] Initializing /data/brian/061124MitogreenDIV3Cell2-1 copy.tif: [testng] [2024-04-10 01:22:42,500] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z027.tif: [testng] [2024-04-10 01:22:42,808] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z020.tif: [testng] [2024-04-10 01:22:42,847] [pool-1-thread-7] Initializing /data/kelsey/Live-Dead Assay 4000 nm pitch PU.TIF: [testng] [2024-04-10 01:22:42,906] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-02.tiff: [testng] [2024-04-10 01:22:43,042] [pool-1-thread-10] Initializing /data/brian/Ch1_fld1.tif: [testng] [2024-04-10 01:22:43,229] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C0_Z036.tif: [testng] [2024-04-10 01:22:43,351] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0207.TIF: [testng] [2024-04-10 01:22:43,395] [pool-1-thread-6] Initializing /data/josiah/cell-Z25.C0.tiff: [testng] [2024-04-10 01:22:43,443] [pool-1-thread-2] Initializing /data/lzw/test.tif: [testng] [2024-04-10 01:22:43,500] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0215.TIF: [testng] [2024-04-10 01:22:44,211] [pool-1-thread-11] Initializing /data/public/condensation/C4.pattern5.tif: [testng] [2024-04-10 01:22:44,262] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0218.TIF: [testng] [2024-04-10 01:22:44,311] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z037.tif: [testng] [2024-04-10 01:22:44,332] [pool-1-thread-2] Initializing /data/ascb/FND-15_PorterFast_4800.tif: [testng] [2024-04-10 01:22:47,078] [pool-1-thread-6] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs005.TIF: [testng] [2024-04-10 01:22:47,144] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z013.tif: [testng] [2024-04-10 01:22:47,207] [pool-1-thread-12] Initializing /data/public/condensation/C4.pattern7.tif: [testng] [2024-04-10 01:22:47,260] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z006.tif: [testng] 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[2024-04-10 01:24:38,655] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-64x16.tiff: [testng] [2024-04-10 01:24:38,833] [pool-1-thread-12] Initializing /data/wayne/apple.tif: [testng] [2024-04-10 01:24:38,855] [pool-1-thread-8] Initializing /data/josh/jnb1s1_raw0239.TIF: [testng] [2024-04-10 01:24:38,982] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z031.tif: [testng] [2024-04-10 01:24:39,055] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C0_Z005.tif: [testng] [2024-04-10 01:24:39,200] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C1_Z025.tif: [testng] [2024-04-10 01:24:39,236] [pool-1-thread-12] Initializing /data/josiah/cell-Z11.C0.tiff: [testng] [2024-04-10 01:24:39,327] [pool-1-thread-7] Initializing /data/josiah/cell-Z16.C1.tiff: [testng] [2024-04-10 01:24:39,420] [pool-1-thread-10] Initializing /data/chris/GFP + Vav2 actin 3b.tif: [testng] [2024-04-10 01:24:39,461] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z061.tif: [testng] [2024-04-10 01:24:39,630] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z011.tif: [testng] [2024-04-10 01:24:39,659] [pool-1-thread-5] Initializing /data/josh/jnb1s1_raw0219.TIF: [testng] [2024-04-10 01:24:39,703] [pool-1-thread-8] Initializing /data/ascb/CYT-44_HowellAcinarLabeled_4800.tif: [testng] [2024-04-10 01:24:39,804] [pool-1-thread-12] Initializing /data/martin/tester.tif: [testng] [2024-04-10 01:24:40,032] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0229.TIF: [testng] [2024-04-10 01:24:40,096] [pool-1-thread-4] Initializing /data/josiah/cell-Z35.C0.tiff: [testng] [2024-04-10 01:24:40,266] [pool-1-thread-11] Initializing /data/ascb/bad/FND-16_FawcettPrincipal_4800.tif: [testng] [2024-04-10 01:24:40,497] [pool-1-thread-10] Initializing /data/pavel/Dmel/full.pattern: [testng] [2024-04-10 01:24:41,269] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z005.tif: [testng] [2024-04-10 01:24:41,386] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z034.tif: [testng] [2024-04-10 01:24:41,415] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z028.tif: [testng] [2024-04-10 01:24:41,453] [pool-1-thread-2] Initializing /data/ascb/bad/FND-20_FawcettLongitudinalMidpieces_4800.tif: [testng] [2024-04-10 01:24:41,519] [pool-1-thread-7] Initializing /data/ascb/FND-22_FawcettLongitudinalMammalian_4800.tif: [testng] [2024-04-10 01:24:41,714] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0205.TIF: [testng] [2024-04-10 01:24:41,867] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z010.tif: [testng] [2024-04-10 01:24:41,977] [pool-1-thread-4] Initializing /data/public/libtiff/strike.tif: [testng] [2024-04-10 01:24:42,069] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z034.tif: [testng] [2024-04-10 01:24:42,216] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z056.tif: [testng] [2024-04-10 01:24:42,398] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-16x16.tiff: [testng] [2024-04-10 01:24:42,437] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z055.tif: [testng] [2024-04-10 01:24:42,543] [pool-1-thread-6] Initializing /data/public/condensation/C4.pattern9.tif: [testng] [2024-04-10 01:24:42,644] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z007.tif: [testng] [2024-04-10 01:24:42,776] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z013.tif: [testng] [2024-04-10 01:24:42,817] [pool-1-thread-12] Initializing /data/public/condensation/A6.pattern1.tif: [testng] [2024-04-10 01:24:43,017] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z038.tif: [testng] [2024-04-10 01:24:43,097] [pool-1-thread-6] Initializing /data/curtis/test1.tiff: [testng] [2024-04-10 01:24:43,118] [pool-1-thread-4] Initializing /data/ascb/CYT-146_Fader_Distribution.tif: [testng] [2024-04-10 01:24:43,319] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs002.TIF: [testng] [2024-04-10 01:24:43,386] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z017.tif: [testng] [2024-04-10 01:24:43,462] [pool-1-thread-6] Initializing /data/jonathan/XSEC-02.TIF: [testng] [2024-04-10 01:24:43,787] [pool-1-thread-12] Initializing /data/david/200umbeads_stack_1fs.tif: [testng] [2024-04-10 01:24:44,020] [pool-1-thread-6] Initializing /data/marc/ball48_LOCI_2_RGB_autoscale_10x.tif: [testng] [2024-04-10 01:24:44,839] [pool-1-thread-5] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs009.TIF: [testng] [2024-04-10 01:24:44,904] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z025.tif: [testng] [2024-04-10 01:24:45,298] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0235.TIF: [testng] [2024-04-10 01:24:45,436] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0220.TIF: [testng] [2024-04-10 01:24:46,012] [pool-1-thread-5] Initializing /data/koen/nt3_cortex_rots_thresh45.tif: [testng] [2024-04-10 01:24:46,181] [pool-1-thread-6] Initializing /data/wayne/northern-8bit.tif: [testng] [2024-04-10 01:24:46,269] [pool-1-thread-9] Initializing /data/glen/6307wmmidb4237m_cmle.tif: [testng] [2024-04-10 01:24:46,383] [pool-1-thread-12] Initializing /data/jae/Second image.tif: [testng] [2024-04-10 01:24:46,583] [pool-1-thread-6] Initializing /data/jayne/Zst_13/WTERZ2_Series13_z000_ch00.tif: [testng] [2024-04-10 01:24:46,762] [pool-1-thread-5] Initializing /data/brian/retina/retina_C0_Z057.tif: [testng] [2024-04-10 01:24:47,056] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0234.TIF: [testng] [2024-04-10 01:24:47,103] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z043.tif: [testng] [2024-04-10 01:24:47,236] [pool-1-thread-9] Initializing /data/josh/NESb_C2_TP7.tiff: [testng] [2024-04-10 01:24:47,442] [pool-1-thread-5] Initializing /data/samples/cielab/Ski_TC8-03_sRGB_lab.tif: [testng] [2024-04-10 01:24:48,009] [pool-1-thread-8] Initializing /data/lzw/BoutonVsAxon.tif: [testng] [2024-04-10 01:24:48,130] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z021.tif: [testng] [2024-04-10 01:24:48,372] [pool-1-thread-9] Initializing /data/public/condensation/B12.pattern1.tif: [testng] [2024-04-10 01:24:48,568] [pool-1-thread-12] Initializing /data/josiah/cell-Z11.C1.tiff: [testng] [2024-04-10 01:24:48,858] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z049.tif: [testng] [2024-04-10 01:24:48,891] [pool-1-thread-7] Initializing /data/stephane/test sortie_t0000_z0000.tif: [testng] [2024-04-10 01:24:48,959] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z021.tif: [testng] [2024-04-10 01:24:49,148] [pool-1-thread-9] Initializing /data/josiah/cell-Z13.C1.tiff: [testng] [2024-04-10 01:24:49,226] [pool-1-thread-7] Initializing /data/qa-4017/Artificial_xyt_8bit.tif: [testng] [2024-04-10 01:24:49,291] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0252.TIF: [testng] [2024-04-10 01:24:49,554] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z029.tif: [testng] [2024-04-10 01:24:49,640] [pool-1-thread-7] Initializing /data/carolyn/tumor_2.tif: [testng] [2024-04-10 01:24:49,894] [pool-1-thread-9] Initializing /data/tom-kazimiers/test_exiftool2_resave.tiff: [testng] [2024-04-10 01:24:49,939] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C0_Z011.tif: [testng] [2024-04-10 01:24:50,109] [pool-1-thread-10] Initializing /data/ascb/FND-28a_PaladeHepatocyteLabeled_4800.tif: [testng] [2024-04-10 01:24:52,751] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0203.TIF: [testng] [2024-04-10 01:24:52,845] [pool-1-thread-7] Initializing /data/brian/PlantCell/PlantCell_C1_Z026.tif: [testng] [2024-04-10 01:24:52,865] [pool-1-thread-12] Initializing /data/kevino/_BF_00001.tif: [testng] [2024-04-10 01:24:53,180] [pool-1-thread-7] Initializing /data/josiah/cell-Z23.C1.tiff: [testng] [2024-04-10 01:24:53,366] [pool-1-thread-8] Initializing /data/wayne/mBoeglin_lzw/mm7.1.2.0_07.tif: [testng] [2024-04-10 01:24:53,458] [pool-1-thread-12] Initializing /data/curtis/test2.tiff: [testng] [2024-04-10 01:24:53,543] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z009.tif: [testng] [2024-04-10 01:24:53,714] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z000.tif: [testng] [2024-04-10 01:24:53,755] [pool-1-thread-12] Initializing /data/josiah/cell-Z8.C1.tiff: [testng] [2024-04-10 01:24:53,783] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z041.tif: [testng] [2024-04-10 01:24:53,988] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z023.tif: [testng] [2024-04-10 01:24:54,124] [pool-1-thread-9] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-60.tiff: [testng] [2024-04-10 01:24:54,185] [pool-1-thread-7] Initializing /data/brian/retina/retina_C1_Z016.tif: [testng] [2024-04-10 01:24:54,224] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z010.tif: [testng] [2024-04-10 01:24:54,343] [pool-1-thread-8] Initializing /data/josiah/cell-Z21.C0.tiff: [testng] [2024-04-10 01:24:54,381] [pool-1-thread-6] Initializing /data/carolyn/tumor_3.tif: [testng] [2024-04-10 01:24:54,458] [pool-1-thread-9] Initializing /data/jacques/20110629-Spat-1_1.tif: [testng] [2024-04-10 01:24:56,003] [pool-1-thread-7] Initializing /data/wayne/clown-rgb.tif: [testng] [2024-04-10 01:24:56,067] [pool-1-thread-12] Initializing /data/curtis/clown.tif: [testng] [2024-04-10 01:24:56,257] [pool-1-thread-8] Initializing /data/ascb/CYT-56_HowellGolgiRibbonRaw_4800.tif: [testng] [2024-04-10 01:24:56,445] [pool-1-thread-12] Initializing /data/brian/PlantCell/PlantCell_C1_Z036.tif: [testng] [2024-04-10 01:24:56,481] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z039.tif: [testng] [2024-04-10 01:24:56,648] [pool-1-thread-6] Initializing /data/josh/NESb_C2_TP5.tiff: [testng] [2024-04-10 01:24:56,812] [pool-1-thread-7] Initializing /data/public/condensation/C4.pattern6.tif: [testng] [2024-04-10 01:24:56,897] [pool-1-thread-12] Initializing /data/brian/retina/retina_C1_Z034.tif: [testng] [2024-04-10 01:24:57,186] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0223.TIF: [testng] [2024-04-10 01:24:57,398] [pool-1-thread-7] Initializing /data/josiah/cell-Z33.C1.tiff: [testng] [2024-04-10 01:24:57,493] [pool-1-thread-6] Initializing /data/curtis/map/brown-fox: [testng] [2024-04-10 01:24:57,726] [pool-1-thread-6] Initializing /data/zstd-compressed/beads.tif: [testng] [2024-04-10 01:24:57,865] [pool-1-thread-7] Initializing /data/ascb/bad/FND-18_FawcettGolgi_4800.tif: [testng] [2024-04-10 01:24:58,031] [pool-1-thread-12] Initializing /data/public/libtiff/quad-tile.tif: [testng] [2024-04-10 01:24:58,295] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0202.TIF: [testng] [2024-04-10 01:24:58,394] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z000.tif: [testng] [2024-04-10 01:24:58,639] [pool-1-thread-12] Initializing /data/ascb/CYT-23_BaintonGlycogenB_4800.tif: [testng] [2024-04-10 01:25:01,005] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0245.TIF: [testng] [2024-04-10 01:25:01,308] [pool-1-thread-6] Initializing /data/josiah/cell-Z3.C0.tiff: [testng] [2024-04-10 01:25:01,523] [pool-1-thread-4] Initializing /data/jae/25Jan10_MDCK_2R_3Dstack_60x_1.tif: [testng] [2024-04-10 01:25:01,576] [pool-1-thread-11] Initializing /data/ascb/CYT-90_PasolliMousePanoramic_4800.tif: [testng] [2024-04-10 01:25:01,644] [pool-1-thread-2] Initializing /data/damian/33m.tiff: [testng] [2024-04-10 01:25:01,810] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x32.tiff: [testng] [2024-04-10 01:25:01,985] [pool-1-thread-1] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] [2024-04-10 01:25:02,054] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0213.TIF: [testng] [2024-04-10 01:25:02,305] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0250.TIF: [testng] [2024-04-10 01:25:02,457] [pool-1-thread-1] Initializing /data/public/condensation/B12.pattern4.tif: [testng] [2024-04-10 01:25:03,064] [pool-1-thread-1] Initializing /data/samples/melissa/imagej-units/1000cmx1000cm-test.tif: [testng] [2024-04-10 01:25:03,252] [pool-1-thread-2] Initializing /data/ascb/CYT-152_Raben_Eating.tif: [testng] [2024-04-10 01:25:03,322] [pool-1-thread-6] Initializing /data/brian/retina/retina_C0_Z054.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38213, Failures: 1, Skips: 0 [testng] =============================================== [testng] [testng] The tests failed. BUILD FAILED /bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest Total time: 5 minutes 8 seconds Build step 'Execute shell' marked build as failure Finished: FAILURE