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Started by upstream project "BIOFORMATS-test-repo" build number 239
originally caused by:
 Started by upstream project "Trigger" build number 264
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins14146709267201355312.sh
+ '[' perkinelmer-densitometer = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_37580_merge_ci -v /uod/idr/repos/curated/perkinelmer-densitometer:/data -v /uod/idr-scratch/merge-ci/curated/perkinelmer-densitometer:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:18:13,890 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:18:13,892 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 01:18:13,892 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:18:13,893 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:18:13,893 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:18:13,893 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:18:13,894 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:18:13,894 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:18:13,894 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:18:13,895 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:18:13,895 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:18:13,895 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:18:14,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:18:14,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:18:14,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:18:14,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:18:14,104 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:18:14,105 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:18:14,105 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:18:14,105 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:18:14,106 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 01:18:14,107 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 01:18:14,107 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 213 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-10-30 01:18:14,120] [main] java.version = 17.0.2
   [testng] 01:18:14,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:18:14,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:14,180 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-30_01-18-14.log]
   [testng] 01:18:14,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-10-30 01:18:14,183] [main] testng.directory = /data
   [testng] [2024-10-30 01:18:14,183] [main] testng.configDirectory = /config
   [testng] [2024-10-30 01:18:14,193] [main] testng.multiplier = 1.0
   [testng] [2024-10-30 01:18:14,193] [main] testng.in-memory = false
   [testng] [2024-10-30 01:18:14,194] [main] testng.allow-missing = false
   [testng] [2024-10-30 01:18:14,194] [main] user.language = en
   [testng] [2024-10-30 01:18:14,194] [main] user.country = ${user.country}
   [testng] [2024-10-30 01:18:14,194] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-10-30 01:18:26,489] [main] ----------------------------------------
   [testng] [2024-10-30 01:18:26,489] [main] Total files: 19
   [testng] [2024-10-30 01:18:26,489] [main] Scan time: 12.295 s (647 ms/file)
   [testng] [2024-10-30 01:18:26,490] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 11 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-10-30 01:18:40,519] [pool-1-thread-1] Initializing /data/ascb/Y7616001.hdr: 
   [testng] 01:18:40,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:18:40,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:40,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-30_01-18-40.log]
   [testng] 01:18:40,522 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c54fce4 - End of configuration.
   [testng] [2024-10-30 01:18:41,015] [pool-1-thread-11] Initializing /data/ascb/3/PT118001.hdr: 
   [testng] 01:18:41,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:18:41,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:41,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-30_01-18-41.log]
   [testng] 01:18:41,017 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c1dea8 - End of configuration.
   [testng] [2024-10-30 01:18:41,727] [pool-1-thread-10] Initializing /data/ascb/1/T8710001.hdr: 
   [testng] 01:18:41,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:18:41,727 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:41,728 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-30_01-18-41.log]
   [testng] 01:18:41,728 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6819a754 - End of configuration.
   [testng] [2024-10-30 01:18:42,551] [pool-1-thread-9] Initializing /data/ascb/U8092001.tif: 
   [testng] 01:18:42,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:18:42,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:42,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-30_01-18-42.log]
   [testng] 01:18:42,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56f83690 - End of configuration.
   [testng] [2024-10-30 01:18:44,410] [pool-1-thread-8] Initializing /data/ascb/2/V8701001.hdr: 
   [testng] 01:18:44,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:18:44,410 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:44,411 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-30_01-18-44.log]
   [testng] 01:18:44,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15b29e6d - End of configuration.
   [testng] [2024-10-30 01:18:44,929] [pool-1-thread-7] Initializing /data/ascb/Y7616001.tif: 
   [testng] 01:18:44,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:18:44,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:44,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-30_01-18-44.log]
   [testng] 01:18:44,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f66862d - End of configuration.
   [testng] [2024-10-30 01:18:46,197] [pool-1-thread-6] Initializing /data/ascb/PT1173A001.hdr: 
   [testng] 01:18:46,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:18:46,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:46,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-30_01-18-46.log]
   [testng] 01:18:46,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ee20634 - End of configuration.
   [testng] [2024-10-30 01:18:46,824] [pool-1-thread-5] Initializing /data/ascb/PT1173A001.tif: 
   [testng] 01:18:46,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:18:46,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:46,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-30_01-18-46.log]
   [testng] 01:18:46,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30a776f0 - End of configuration.
   [testng] [2024-10-30 01:18:48,103] [pool-1-thread-4] Initializing /data/ascb/DP1190.hdr: 
   [testng] 01:18:48,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:18:48,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:48,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-30_01-18-48.log]
   [testng] 01:18:48,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e213dfd - End of configuration.
   [testng] [2024-10-30 01:18:48,639] [pool-1-thread-3] Initializing /data/ascb/U8092001.hdr: 
   [testng] 01:18:48,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:18:48,639 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:48,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-30_01-18-48.log]
   [testng] 01:18:48,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@310f2c99 - End of configuration.
   [testng] [2024-10-30 01:18:49,204] [pool-1-thread-2] Initializing /data/ascb/DP1190.tif: 
   [testng] 01:18:49,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:18:49,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:18:49,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-30_01-18-49.log]
   [testng] 01:18:49,205 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f8c89ad - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 583, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 53 seconds
Finished: SUCCESS