![[Jenkins]](/jenkins/static/f6f303f9/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 239 originally caused by: Started by upstream project "Trigger" build number 264 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins1739652387499195340.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37607_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:21:47,127 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:21:47,128 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 02:21:47,128 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:21:47,129 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:21:47,130 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:21:47,130 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:21:47,130 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:21:47,130 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:21:47,131 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:21:47,131 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:21:47,132 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:21:47,132 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:21:47,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:21:47,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:21:47,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:21:47,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:21:47,320 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:21:47,321 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:21:47,321 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:21:47,321 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:21:47,321 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 02:21:47,322 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 02:21:47,322 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 191 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-30 02:21:47,331] [main] java.version = 17.0.2 [testng] 02:21:47,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:21:47,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:47,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-30_02-21-47.log] [testng] 02:21:47,377 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-30 02:21:47,379] [main] testng.directory = /data [testng] [2024-10-30 02:21:47,379] [main] testng.configDirectory = /config [testng] [2024-10-30 02:21:47,388] [main] testng.multiplier = 1.0 [testng] [2024-10-30 02:21:47,389] [main] testng.in-memory = false [testng] [2024-10-30 02:21:47,390] [main] testng.allow-missing = false [testng] [2024-10-30 02:21:47,390] [main] user.language = en [testng] [2024-10-30 02:21:47,390] [main] user.country = ${user.country} [testng] [2024-10-30 02:21:47,390] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-30 02:21:47,850] [main] ---------------------------------------- [testng] [2024-10-30 02:21:47,850] [main] Total files: 19 [testng] [2024-10-30 02:21:47,850] [main] Scan time: 0.46 s (24 ms/file) [testng] [2024-10-30 02:21:47,850] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-30 02:21:57,929] [pool-1-thread-1] Initializing /data/samples/800R PICT0010.MRW: [testng] 02:21:57,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:21:57,930 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:57,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-30_02-21-57.log] [testng] 02:21:57,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7689cc07 - End of configuration. [testng] [2024-10-30 02:21:58,403] [pool-1-thread-12] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] 02:21:58,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:21:58,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:58,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-30_02-21-58.log] [testng] 02:21:58,404 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6503c5f0 - End of configuration. [testng] [2024-10-30 02:21:58,915] [pool-1-thread-11] Initializing /data/samples/3200R PICT0006.MRW: [testng] 02:21:58,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:21:58,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:58,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-30_02-21-58.log] [testng] 02:21:58,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63213f64 - End of configuration. [testng] [2024-10-30 02:21:59,366] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW: [testng] 02:21:59,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:21:59,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:59,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-30_02-21-59.log] [testng] 02:21:59,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31bafdac - End of configuration. [testng] [2024-10-30 02:21:59,838] [pool-1-thread-9] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] 02:21:59,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:21:59,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:59,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-30_02-21-59.log] [testng] 02:21:59,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3045b95a - End of configuration. [testng] [2024-10-30 02:22:00,393] [pool-1-thread-8] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] 02:22:00,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:22:00,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:00,394 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-30_02-22-00.log] [testng] 02:22:00,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18d71868 - End of configuration. [testng] [2024-10-30 02:22:00,884] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 02:22:00,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:22:00,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:00,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-30_02-22-00.log] [testng] 02:22:00,885 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27911ea8 - End of configuration. [testng] [2024-10-30 02:22:01,341] [pool-1-thread-6] Initializing /data/samples/400R PICT0003.MRW: [testng] 02:22:01,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:22:01,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:01,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-30_02-22-01.log] [testng] 02:22:01,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b48a44e - End of configuration. [testng] [2024-10-30 02:22:01,804] [pool-1-thread-5] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 02:22:01,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:22:01,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:01,806 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-30_02-22-01.log] [testng] 02:22:01,806 |-INFO in ch.qos.logback.core.sift.SiftProcessor@790a6afa - End of configuration. [testng] [2024-10-30 02:22:02,269] [pool-1-thread-4] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] 02:22:02,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:22:02,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:02,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-30_02-22-02.log] [testng] 02:22:02,271 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6526877 - End of configuration. [testng] [2024-10-30 02:22:02,790] [pool-1-thread-3] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 02:22:02,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:22:02,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:02,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-30_02-22-02.log] [testng] 02:22:02,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5389b543 - End of configuration. [testng] [2024-10-30 02:22:03,299] [pool-1-thread-2] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] 02:22:03,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:22:03,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:03,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-30_02-22-03.log] [testng] 02:22:03,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fedd022 - End of configuration. [testng] [2024-10-30 02:22:12,515] [pool-1-thread-10] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] [2024-10-30 02:22:12,965] [pool-1-thread-12] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] [2024-10-30 02:22:13,507] [pool-1-thread-9] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] [2024-10-30 02:22:14,004] [pool-1-thread-5] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] [2024-10-30 02:22:14,536] [pool-1-thread-4] Initializing /data/samples/1600R PICT0005.MRW: [testng] [2024-10-30 02:22:15,011] [pool-1-thread-7] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] [2024-10-30 02:22:15,418] [pool-1-thread-8] Initializing /data/samples/200R PICT0002.MRW: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 39 seconds Finished: SUCCESS