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Started by upstream project "BIOFORMATS-test-repo" build number 239 originally caused by: Started by upstream project "Trigger" build number 264 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins10764737259899905833.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37641_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:09:27,974 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:09:27,976 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 03:09:27,976 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:09:27,976 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:09:27,977 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:09:27,977 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:09:27,977 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:09:27,977 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:09:27,978 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:09:27,978 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:09:27,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:09:27,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:09:28,134 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:09:28,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:09:28,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:09:28,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:09:28,161 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:09:28,161 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:09:28,161 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:09:28,162 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:09:28,162 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 03:09:28,163 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 03:09:28,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 185 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-30 03:09:28,171] [main] java.version = 17.0.2 [testng] 03:09:28,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:09:28,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:09:28,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-30_03-09-28.log] [testng] 03:09:28,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-10-30 03:09:28,216] [main] testng.directory = /data [testng] [2024-10-30 03:09:28,216] [main] testng.configDirectory = /config [testng] [2024-10-30 03:09:28,224] [main] testng.multiplier = 1.0 [testng] [2024-10-30 03:09:28,225] [main] testng.in-memory = false [testng] [2024-10-30 03:09:28,225] [main] testng.allow-missing = false [testng] [2024-10-30 03:09:28,225] [main] user.language = en [testng] [2024-10-30 03:09:28,225] [main] user.country = ${user.country} [testng] [2024-10-30 03:09:28,225] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-30 03:11:40,073] [main] ---------------------------------------- [testng] [2024-10-30 03:11:40,073] [main] Total files: 15735 [testng] [2024-10-30 03:11:40,073] [main] Scan time: 131.848 s (8 ms/file) [testng] [2024-10-30 03:11:40,073] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-30 03:14:58,468] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] 03:14:58,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:14:58,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:14:58,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-30_03-14-58.log] [testng] 03:14:58,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6939bf0d - End of configuration. [testng] [2024-10-30 03:15:00,135] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] 03:15:00,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:15:00,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:00,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-30_03-15-00.log] [testng] 03:15:00,139 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fc21711 - End of configuration. [testng] [2024-10-30 03:15:02,330] [pool-1-thread-11] Initializing /data/converted/converted/damian.tif: [testng] 03:15:02,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:15:02,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:02,331 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-30_03-15-02.log] [testng] 03:15:02,331 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cbea213 - End of configuration. [testng] [2024-10-30 03:15:03,918] [pool-1-thread-10] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 03:15:03,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:15:03,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:03,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-30_03-15-03.log] [testng] 03:15:03,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3619f962 - End of configuration. [testng] [2024-10-30 03:15:07,381] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 03:15:07,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:15:07,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:07,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-30_03-15-07.log] [testng] 03:15:07,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e3c886b - End of configuration. [testng] [2024-10-30 03:15:09,275] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] 03:15:09,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:15:09,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:09,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-30_03-15-09.log] [testng] 03:15:09,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31afbe7a - End of configuration. [testng] [2024-10-30 03:15:11,213] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] 03:15:11,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:15:11,213 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:11,214 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-30_03-15-11.log] [testng] 03:15:11,214 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4032987e - End of configuration. [testng] [2024-10-30 03:15:13,017] [pool-1-thread-6] Initializing /data/converted/sebastien/test.tif: [testng] 03:15:13,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:15:13,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:13,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-30_03-15-13.log] [testng] 03:15:13,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74fa9a51 - End of configuration. [testng] [2024-10-30 03:15:14,729] [pool-1-thread-5] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 03:15:14,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:15:14,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:14,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-30_03-15-14.log] [testng] 03:15:14,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b2d131f - End of configuration. [testng] [2024-10-30 03:15:16,514] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] 03:15:16,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:15:16,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:16,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-30_03-15-16.log] [testng] 03:15:16,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b6cb122 - End of configuration. [testng] [2024-10-30 03:15:17,853] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] 03:15:17,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:15:17,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:17,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-30_03-15-17.log] [testng] 03:15:17,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c3fa18 - End of configuration. [testng] [2024-10-30 03:15:19,253] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] 03:15:19,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:15:19,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:19,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-30_03-15-19.log] [testng] 03:15:19,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18b1697e - End of configuration. [testng] [2024-10-30 03:15:46,874] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-10-30 03:15:58,301] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-10-30 03:16:02,711] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-10-30 03:16:42,596] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-10-30 03:19:42,123] [pool-1-thread-4] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-10-30 03:19:47,003] [pool-1-thread-5] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-10-30 03:20:05,271] [pool-1-thread-1] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-10-30 03:20:32,525] [pool-1-thread-1] Initializing /data/converted/michel/e.tif: [testng] [2024-10-30 03:21:36,905] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-10-30 03:22:10,272] [pool-1-thread-5] Initializing /data/converted/michel/a.tif: [testng] [2024-10-30 03:22:17,473] [pool-1-thread-11] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-10-30 03:22:34,388] [pool-1-thread-5] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-10-30 03:22:51,310] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-10-30 03:23:14,901] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-10-30 03:23:27,486] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-10-30 03:23:49,944] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-10-30 03:23:59,585] [pool-1-thread-2] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-10-30 03:24:01,397] [pool-1-thread-12] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-10-30 03:24:23,808] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-10-30 03:24:25,500] [pool-1-thread-6] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-10-30 03:24:57,500] [pool-1-thread-7] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-10-30 03:25:19,451] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-10-30 03:25:21,486] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-10-30 03:25:45,245] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-10-30 03:26:08,151] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-10-30 03:26:17,100] [pool-1-thread-6] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-10-30 03:26:30,428] [pool-1-thread-2] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-10-30 03:26:40,643] [pool-1-thread-8] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-10-30 03:26:52,080] [pool-1-thread-11] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-10-30 03:27:18,711] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-10-30 03:27:43,946] [pool-1-thread-12] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-10-30 03:28:14,882] [pool-1-thread-12] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-10-30 03:28:37,019] [pool-1-thread-12] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-10-30 03:28:56,175] [pool-1-thread-3] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-10-30 03:29:00,033] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-10-30 03:31:53,614] [pool-1-thread-7] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-10-30 03:32:33,315] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-10-30 03:33:12,324] [pool-1-thread-5] Initializing /data/scott/Slide133-08.tif: [testng] [2024-10-30 03:33:38,853] [pool-1-thread-5] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-10-30 03:33:40,574] [pool-1-thread-1] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-10-30 03:34:18,450] [pool-1-thread-5] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-10-30 03:34:25,425] [pool-1-thread-11] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-10-30 03:34:45,958] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-10-30 03:34:55,556] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-10-30 03:35:12,292] [pool-1-thread-9] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-10-30 03:36:38,925] [pool-1-thread-12] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-10-30 03:38:23,953] [pool-1-thread-7] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-10-30 03:40:14,395] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-10-30 03:40:57,663] [pool-1-thread-8] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-10-30 03:41:44,763] [pool-1-thread-11] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-10-30 03:42:48,341] [pool-1-thread-5] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-10-30 03:43:10,925] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-10-30 03:47:29,185] [pool-1-thread-10] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-10-30 03:47:48,004] [pool-1-thread-3] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-10-30 03:47:59,966] [pool-1-thread-10] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-10-30 03:48:13,034] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-10-30 03:48:43,040] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-10-30 03:50:34,224] [pool-1-thread-1] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-10-30 03:50:44,201] [pool-1-thread-8] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-10-30 03:51:01,955] [pool-1-thread-1] Initializing /data/scott/Slide133-04.tif: [testng] [2024-10-30 03:51:21,439] [pool-1-thread-5] Initializing /data/converted/converted/2chz.tif: [testng] [2024-10-30 03:51:33,807] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-10-30 03:53:12,741] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-10-30 03:54:51,326] [pool-1-thread-8] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-10-30 03:54:55,695] [pool-1-thread-4] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-10-30 03:55:03,493] [pool-1-thread-5] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-10-30 03:55:30,654] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-10-30 03:55:44,272] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-10-30 03:56:06,437] [pool-1-thread-4] Initializing /data/converted/michel/c.tif: [testng] [2024-10-30 03:56:14,437] [pool-1-thread-7] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-10-30 03:56:20,876] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-10-30 03:56:24,624] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-10-30 03:56:41,809] [pool-1-thread-4] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-10-30 03:57:06,376] [pool-1-thread-7] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-10-30 03:58:30,675] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-10-30 03:59:10,552] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-10-30 03:59:24,479] [pool-1-thread-1] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-10-30 03:59:54,877] [pool-1-thread-10] Initializing /data/converted/dietmar/138.tif: [testng] [2024-10-30 04:00:42,997] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-10-30 04:01:49,592] [pool-1-thread-9] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-10-30 04:03:13,418] [pool-1-thread-8] Initializing /data/converted/dietmar/137.tif: [testng] [2024-10-30 04:03:37,865] [pool-1-thread-3] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-10-30 04:03:46,912] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-10-30 04:04:36,626] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-10-30 04:05:27,255] [pool-1-thread-3] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-10-30 04:05:33,885] [pool-1-thread-4] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-10-30 04:05:37,736] [pool-1-thread-6] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-10-30 04:05:55,175] [pool-1-thread-7] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-10-30 04:06:01,126] [pool-1-thread-3] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-10-30 04:06:16,022] [pool-1-thread-4] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-10-30 04:06:21,234] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-10-30 04:06:27,489] [pool-1-thread-3] Initializing /data/scott/Slide133-11.tif: [testng] [2024-10-30 04:06:33,504] [pool-1-thread-10] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-10-30 04:06:47,369] [pool-1-thread-4] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-10-30 04:06:54,562] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-10-30 04:07:30,908] [pool-1-thread-4] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-10-30 04:07:55,140] [pool-1-thread-4] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-10-30 04:08:03,886] [pool-1-thread-12] Initializing /data/converted/michel/d.tif: [testng] [2024-10-30 04:08:08,884] [pool-1-thread-1] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-10-30 04:08:31,507] [pool-1-thread-12] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-10-30 04:08:34,717] [pool-1-thread-1] Initializing /data/scott/Slide133-01.tif: [testng] [2024-10-30 04:08:52,997] [pool-1-thread-12] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-10-30 04:08:56,323] [pool-1-thread-6] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-10-30 04:09:01,082] [pool-1-thread-1] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-10-30 04:09:26,710] [pool-1-thread-1] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-10-30 04:09:38,534] [pool-1-thread-6] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-10-30 04:09:52,314] [pool-1-thread-1] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-10-30 04:09:53,800] [pool-1-thread-8] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-10-30 04:10:14,723] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-10-30 04:10:21,563] [pool-1-thread-8] Initializing /data/converted/nicolas/image.tif: [testng] [2024-10-30 04:10:37,182] [pool-1-thread-9] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-10-30 04:10:43,226] [pool-1-thread-8] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-10-30 04:10:46,149] [pool-1-thread-9] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] 04:48:18,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:48:18,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:48:18,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-30_04-48-18.log] [testng] 04:48:18,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41fc5625 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 98 minutes 53 seconds Finished: SUCCESS