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Started by upstream project "BIOFORMATS-test-repo" build number 240 originally caused by: Started by upstream project "Trigger" build number 265 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins17701589968198717203.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37718_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:37:49,991 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:37:49,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:37:49,992 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:37:49,993 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:37:49,993 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:37:49,994 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:37:49,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:37:49,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:37:49,994 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:37:49,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:37:49,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:37:49,995 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:37:50,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:37:50,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:37:50,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:37:50,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:37:50,182 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:37:50,182 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:37:50,182 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:37:50,182 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:37:50,182 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:37:50,183 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:37:50,183 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-31 00:37:50,192] [main] java.version = 21 [testng] 00:37:50,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:37:50,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:37:50,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-31_00-37-50.log] [testng] 00:37:50,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-31 00:37:50,239] [main] testng.directory = /data [testng] [2024-10-31 00:37:50,240] [main] testng.configDirectory = /config [testng] [2024-10-31 00:37:50,248] [main] testng.multiplier = 1.0 [testng] [2024-10-31 00:37:50,249] [main] testng.in-memory = false [testng] [2024-10-31 00:37:50,249] [main] testng.allow-missing = false [testng] [2024-10-31 00:37:50,249] [main] user.language = en [testng] [2024-10-31 00:37:50,249] [main] user.country = ${user.country} [testng] [2024-10-31 00:37:50,249] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-31 00:38:11,067] [main] ---------------------------------------- [testng] [2024-10-31 00:38:11,067] [main] Total files: 259 [testng] [2024-10-31 00:38:11,067] [main] Scan time: 20.818 s (80 ms/file) [testng] [2024-10-31 00:38:11,068] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-31 00:45:05,058] [pool-1-thread-1] Initializing /data/molly/11OCT2.OIF: [testng] 00:45:05,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:45:05,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:05,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-31_00-45-05.log] [testng] 00:45:05,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34016984 - End of configuration. [testng] [2024-10-31 00:45:08,674] [pool-1-thread-12] Initializing /data/kay/IM2pg.oib: [testng] 00:45:08,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:45:08,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:08,676 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-31_00-45-08.log] [testng] 00:45:08,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@152cc6fb - End of configuration. [testng] [2024-10-31 00:45:08,976] [pool-1-thread-11] Initializing /data/johannes/step2.bmp: [testng] 00:45:08,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:45:08,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:08,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-31_00-45-08.log] [testng] 00:45:08,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1db1d32f - End of configuration. [testng] [2024-10-31 00:45:08,998] [pool-1-thread-10] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] 00:45:08,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:45:08,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:08,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-31_00-45-08.log] [testng] 00:45:08,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bfb3c0 - End of configuration. [testng] [2024-10-31 00:45:09,234] [pool-1-thread-9] Initializing /data/chris/missegragation-15.oib: [testng] 00:45:09,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:45:09,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:09,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-31_00-45-09.log] [testng] 00:45:09,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1da4d690 - End of configuration. [testng] [2024-10-31 00:45:09,355] [pool-1-thread-8] Initializing /data/aryeh/1h_after_pdt.oib: [testng] 00:45:09,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:45:09,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:09,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-31_00-45-09.log] [testng] 00:45:09,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cb74978 - End of configuration. [testng] [2024-10-31 00:45:12,471] [pool-1-thread-7] Initializing /data/allan/new_30min3_1z2.oib: [testng] 00:45:12,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:45:12,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:12,471 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-31_00-45-12.log] [testng] 00:45:12,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d3c5000 - End of configuration. [testng] [2024-10-31 00:45:12,605] [pool-1-thread-6] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] 00:45:12,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:45:12,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:12,606 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-31_00-45-12.log] [testng] 00:45:12,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c27da4 - End of configuration. [testng] [2024-10-31 00:45:12,733] [pool-1-thread-5] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 00:45:12,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:45:12,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:12,734 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-31_00-45-12.log] [testng] 00:45:12,734 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f26caf2 - End of configuration. [testng] [2024-10-31 00:45:12,857] [pool-1-thread-4] Initializing /data/stefan/cytosol_01a.oif: [testng] 00:45:12,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:45:12,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:12,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-31_00-45-12.log] [testng] 00:45:12,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@262f9fe8 - End of configuration. [testng] [2024-10-31 00:45:20,645] [pool-1-thread-3] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] 00:45:20,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:45:20,645 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:20,646 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-31_00-45-20.log] [testng] 00:45:20,646 |-INFO in ch.qos.logback.core.sift.SiftProcessor@145564dc - End of configuration. [testng] [2024-10-31 00:45:20,730] [pool-1-thread-2] Initializing /data/glen/LUT issue/60x11.oif: [testng] 00:45:20,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:45:20,730 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:45:20,731 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-31_00-45-20.log] [testng] 00:45:20,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b507987 - End of configuration. [testng] [2024-10-31 00:45:23,600] [pool-1-thread-11] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-10-31 00:45:27,588] [pool-1-thread-9] Initializing /data/aryeh/1h.oib: [testng] [2024-10-31 00:45:28,661] [pool-1-thread-7] Initializing /data/david/Image0016.oib: [testng] [2024-10-31 00:45:29,115] [pool-1-thread-6] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-10-31 00:45:29,448] [pool-1-thread-12] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-10-31 00:45:29,854] [pool-1-thread-10] Initializing /data/johannes/step4b.bmp: [testng] [2024-10-31 00:45:31,710] [pool-1-thread-10] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-10-31 00:45:32,450] [pool-1-thread-7] Initializing /data/tom/RGB-1.avi: [testng] [2024-10-31 00:45:32,815] [pool-1-thread-6] Initializing /data/aryeh/control_test.oib: [testng] [2024-10-31 00:45:35,759] [pool-1-thread-12] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-10-31 00:45:37,077] [pool-1-thread-9] Initializing /data/johannes/step4.bmp: [testng] [2024-10-31 00:45:37,669] [pool-1-thread-10] Initializing /data/glen/singlesimul.oif: [testng] [2024-10-31 00:45:38,518] [pool-1-thread-7] Initializing /data/johannes/step3.bmp: [testng] [2024-10-31 00:45:38,620] [pool-1-thread-3] Initializing /data/glen/Image0002.oif: [testng] [2024-10-31 00:45:39,913] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-10-31 00:45:40,961] [pool-1-thread-7] Initializing /data/glen/seqlinestack.oib: [testng] [2024-10-31 00:45:41,414] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-10-31 00:45:42,151] [pool-1-thread-12] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-10-31 00:45:43,128] [pool-1-thread-8] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-10-31 00:45:43,920] [pool-1-thread-9] Initializing /data/johannes/step1.bmp: [testng] [2024-10-31 00:45:45,214] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oib: [testng] [2024-10-31 00:45:45,511] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-10-31 00:45:46,321] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-10-31 00:45:46,789] [pool-1-thread-8] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-10-31 00:45:48,126] [pool-1-thread-12] Initializing /data/glen/singleseqline.oib: [testng] [2024-10-31 00:45:49,102] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-10-31 00:45:50,275] [pool-1-thread-7] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-10-31 00:45:50,774] [pool-1-thread-9] Initializing /data/yoshihito/XY.oib: [testng] [2024-10-31 00:45:51,372] [pool-1-thread-11] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-10-31 00:45:52,017] [pool-1-thread-12] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-10-31 00:45:53,623] [pool-1-thread-6] Initializing /data/michael/CELL3.oib: [testng] [2024-10-31 00:45:53,942] [pool-1-thread-9] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-10-31 00:45:54,330] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-10-31 00:45:55,039] [pool-1-thread-8] Initializing /data/simon/never_worked.oib: [testng] [2024-10-31 00:45:56,379] [pool-1-thread-12] Initializing /data/johannes/step5b.bmp: [testng] [2024-10-31 00:45:56,919] [pool-1-thread-6] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-10-31 00:45:57,716] [pool-1-thread-8] Initializing /data/glen/singleseqframe.oif: [testng] [2024-10-31 00:45:58,383] [pool-1-thread-12] Initializing /data/molly/11OCT5.OIF: [testng] [2024-10-31 00:46:01,979] [pool-1-thread-10] Initializing /data/brian/lambda02nm.oib: [testng] [2024-10-31 00:46:02,361] [pool-1-thread-7] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-10-31 00:46:03,721] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-10-31 00:46:04,496] [pool-1-thread-6] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-10-31 00:46:05,181] [pool-1-thread-7] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-10-31 00:46:06,267] [pool-1-thread-10] Initializing /data/marc/V0606L.oib: [testng] [2024-10-31 00:46:09,275] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-10-31 00:46:10,502] [pool-1-thread-6] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-10-31 00:46:10,780] [pool-1-thread-7] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-10-31 00:46:12,761] [pool-1-thread-6] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-10-31 00:46:12,941] [pool-1-thread-7] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-10-31 00:46:13,779] [pool-1-thread-6] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-10-31 00:46:14,062] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-10-31 00:46:18,371] [pool-1-thread-6] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-10-31 00:46:20,672] [pool-1-thread-8] Initializing /data/molly/11OCT6.OIF: [testng] [2024-10-31 00:46:25,288] [pool-1-thread-11] Initializing /data/david/Image0016.oif: [testng] [2024-10-31 00:46:25,666] [pool-1-thread-7] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-10-31 00:46:25,896] [pool-1-thread-10] Initializing /data/glen/notsaturated.oif: [testng] [2024-10-31 00:46:26,673] [pool-1-thread-9] Initializing /data/marc/V0606J.oib: [testng] [2024-10-31 00:46:30,316] [pool-1-thread-7] Initializing /data/molly/11OCT7.OIF: [testng] [2024-10-31 00:46:47,510] [pool-1-thread-9] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-10-31 00:46:49,886] [pool-1-thread-9] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-10-31 00:47:13,005] [pool-1-thread-5] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-10-31 00:47:15,685] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-10-31 00:47:20,715] [pool-1-thread-11] Initializing /data/sten/01.oib: [testng] [2024-10-31 00:47:24,072] [pool-1-thread-5] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-10-31 00:47:25,072] [pool-1-thread-11] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-10-31 00:47:28,411] [pool-1-thread-5] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-10-31 00:47:30,810] [pool-1-thread-11] Initializing /data/brian/Kaede15.oib: [testng] [2024-10-31 00:47:35,784] [pool-1-thread-11] Initializing /data/molly/11OCT8.OIF: [testng] [2024-10-31 00:52:35,418] [pool-1-thread-10] Initializing /data/jae/Image0001.oib: [testng] [2024-10-31 00:52:41,592] [pool-1-thread-10] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-10-31 00:52:48,103] [pool-1-thread-10] Initializing /data/glen/4205basal106072.oif: [testng] [2024-10-31 00:55:17,740] [pool-1-thread-2] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-10-31 00:55:22,911] [pool-1-thread-2] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-10-31 00:55:27,884] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-10-31 00:55:33,585] [pool-1-thread-2] Initializing /data/simon/used_to_work.oib: [testng] [2024-10-31 00:55:39,092] [pool-1-thread-2] Initializing /data/glen/Null file/test change.oif: [testng] [2024-10-31 00:56:07,654] [pool-1-thread-2] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-10-31 00:56:11,435] [pool-1-thread-2] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-10-31 00:56:15,732] [pool-1-thread-2] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-10-31 00:56:20,233] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-10-31 00:56:24,057] [pool-1-thread-2] Initializing /data/christian/20min.oif: [testng] [2024-10-31 00:56:33,085] [pool-1-thread-5] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-10-31 00:56:38,213] [pool-1-thread-5] Initializing /data/glen/111407.oif: [testng] [2024-10-31 00:56:42,556] [pool-1-thread-2] Initializing /data/glen/simulstack.oif: [testng] [2024-10-31 00:58:01,096] [pool-1-thread-3] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-10-31 00:58:05,860] [pool-1-thread-3] Initializing /data/yasunori/series_1.oib: [testng] [2024-10-31 00:58:11,069] [pool-1-thread-3] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-10-31 00:59:42,698] [pool-1-thread-3] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-10-31 01:00:00,233] [pool-1-thread-12] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-10-31 01:00:17,293] [pool-1-thread-7] Initializing /data/glen/singleseqline.oif: [testng] [2024-10-31 01:00:21,231] [pool-1-thread-12] Initializing /data/glen/simulstack.oib: [testng] [2024-10-31 01:00:24,157] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-10-31 01:00:29,430] [pool-1-thread-12] Initializing /data/pedro/plv-test.oib: [testng] [2024-10-31 01:00:33,456] [pool-1-thread-12] Initializing /data/tom/zseries-test.oib: [testng] [2024-10-31 01:00:38,766] [pool-1-thread-12] Initializing /data/allan/62909#1.oib: [testng] [2024-10-31 01:00:41,413] [pool-1-thread-12] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-10-31 01:00:47,766] [pool-1-thread-7] Initializing /data/molly/11OCT10.OIF: [testng] [2024-10-31 01:01:59,298] [pool-1-thread-3] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-10-31 01:02:42,203] [pool-1-thread-8] Initializing /data/brian/FLIP.oib: [testng] [2024-10-31 01:02:48,211] [pool-1-thread-8] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-10-31 01:03:06,842] [pool-1-thread-11] Initializing /data/molly/11OCT11.OIF: [testng] [2024-10-31 01:06:17,374] [pool-1-thread-5] Initializing /data/yoshihito/XY.oif: [testng] [2024-10-31 01:06:28,623] [pool-1-thread-2] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-10-31 01:06:31,574] [pool-1-thread-2] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-10-31 01:06:35,016] [pool-1-thread-5] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-10-31 01:06:38,484] [pool-1-thread-5] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-10-31 01:06:39,122] [pool-1-thread-2] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-10-31 01:06:56,542] [pool-1-thread-6] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-10-31 01:07:00,300] [pool-1-thread-6] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-10-31 01:07:03,172] [pool-1-thread-5] Initializing /data/karl/Image0009.oib: [testng] [2024-10-31 01:07:04,327] [pool-1-thread-6] Initializing /data/molly/11OCT4.OIF: [testng] [2024-10-31 01:07:19,557] [pool-1-thread-5] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-10-31 01:07:23,037] [pool-1-thread-5] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-10-31 01:07:27,363] [pool-1-thread-5] Initializing /data/molly/11OCT9.OIF: [testng] [2024-10-31 01:08:43,966] [pool-1-thread-2] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-10-31 01:08:50,224] [pool-1-thread-2] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-10-31 01:08:55,288] [pool-1-thread-2] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-10-31 01:09:04,275] [pool-1-thread-2] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-10-31 01:09:26,627] [pool-1-thread-8] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-10-31 01:09:32,160] [pool-1-thread-8] Initializing /data/molly/11OCT3.OIF: [testng] [2024-10-31 01:10:54,465] [pool-1-thread-10] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-10-31 01:10:55,686] [pool-1-thread-10] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-10-31 01:11:48,387] [pool-1-thread-1] Initializing /data/monica/Image0056.oif: [testng] [2024-10-31 01:12:58,524] [pool-1-thread-1] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-10-31 01:13:06,131] [pool-1-thread-1] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-10-31 01:13:13,222] [pool-1-thread-1] Initializing /data/glen/seqlinestack.oif: [testng] [2024-10-31 01:15:54,837] [pool-1-thread-10] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-10-31 01:16:03,646] [pool-1-thread-10] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-10-31 01:16:09,399] [pool-1-thread-10] Initializing /data/glen/notsaturated.oib: [testng] [2024-10-31 01:16:17,140] [pool-1-thread-10] Initializing /data/glen/singlesimul.oib: [testng] [2024-10-31 01:16:23,139] [pool-1-thread-10] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-10-31 01:17:14,541] [pool-1-thread-10] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] 02:06:37,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:06:37,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:06:37,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-31_02-06-37.log] [testng] 02:06:37,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4910dad8 - End of configuration. [testng] 02:22:07,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:22:07,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:07,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-31_02-22-07.log] [testng] 02:22:07,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d93e3a6 - End of configuration. [testng] 02:26:52,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:26:52,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:26:52,318 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-31_02-26-52.log] [testng] 02:26:52,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a0d555f - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 109 minutes 5 seconds Finished: SUCCESS