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Started by upstream project "BIOFORMATS-test-repo" build number 240 originally caused by: Started by upstream project "Trigger" build number 265 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins11034575693351941451.sh + '[' pict = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37727_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:44:38,303 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:44:38,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 00:44:38,305 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:44:38,306 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:44:38,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:44:38,306 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:44:38,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:44:38,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:44:38,307 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:44:38,308 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:44:38,308 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:44:38,308 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:44:38,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:44:38,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:44:38,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:44:38,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:44:38,506 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:44:38,506 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:44:38,507 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:44:38,507 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:44:38,507 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 00:44:38,508 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 00:44:38,508 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-31 00:44:38,517] [main] java.version = 21 [testng] 00:44:38,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:44:38,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:38,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-31_00-44-38.log] [testng] 00:44:38,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-31 00:44:38,565] [main] testng.directory = /data [testng] [2024-10-31 00:44:38,565] [main] testng.configDirectory = /config [testng] [2024-10-31 00:44:38,574] [main] testng.multiplier = 1.0 [testng] [2024-10-31 00:44:38,574] [main] testng.in-memory = false [testng] [2024-10-31 00:44:38,574] [main] testng.allow-missing = false [testng] [2024-10-31 00:44:38,574] [main] user.language = en [testng] [2024-10-31 00:44:38,574] [main] user.country = ${user.country} [testng] [2024-10-31 00:44:38,574] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-31 00:44:39,222] [main] ---------------------------------------- [testng] [2024-10-31 00:44:39,222] [main] Total files: 25 [testng] [2024-10-31 00:44:39,222] [main] Scan time: 0.647 s (25 ms/file) [testng] [2024-10-31 00:44:39,222] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-31 00:44:41,570] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B32.pct: [testng] 00:44:41,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:44:41,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:41,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-31_00-44-41.log] [testng] 00:44:41,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b8e7005 - End of configuration. [testng] [2024-10-31 00:44:41,635] [pool-1-thread-12] Initializing /data/brian/images/WHT.PCT: [testng] 00:44:41,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:44:41,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:41,637 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-31_00-44-41.log] [testng] 00:44:41,637 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2db3a58 - End of configuration. [testng] [2024-10-31 00:44:41,718] [pool-1-thread-11] Initializing /data/jqd/mireSixteen.pict: [testng] 00:44:41,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:44:41,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:41,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-31_00-44-41.log] [testng] 00:44:41,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38bb3d81 - End of configuration. [testng] [2024-10-31 00:44:41,769] [pool-1-thread-10] Initializing /data/brian/images/FLAG_RGB.pct: [testng] 00:44:41,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:44:41,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:41,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-31_00-44-41.log] [testng] 00:44:41,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d51f4c3 - End of configuration. [testng] [2024-10-31 00:44:41,812] [pool-1-thread-9] Initializing /data/misc/planet2.pict: [testng] 00:44:41,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:44:41,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:41,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-31_00-44-41.log] [testng] 00:44:41,814 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6535a1df - End of configuration. [testng] [2024-10-31 00:44:41,902] [pool-1-thread-8] Initializing /data/brian/images/GRN.PCT: [testng] 00:44:41,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:44:41,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:41,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-31_00-44-41.log] [testng] 00:44:41,904 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67b8a9b2 - End of configuration. [testng] [2024-10-31 00:44:41,963] [pool-1-thread-7] Initializing /data/brian/images/YEL.PCT: [testng] 00:44:41,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:44:41,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:41,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-31_00-44-41.log] [testng] 00:44:41,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71390107 - End of configuration. [testng] [2024-10-31 00:44:42,035] [pool-1-thread-6] Initializing /data/misc/planet.png: [testng] 00:44:42,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:44:42,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:42,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-31_00-44-42.log] [testng] 00:44:42,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25d4b6f0 - End of configuration. [testng] [2024-10-31 00:44:42,045] [pool-1-thread-5] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 00:44:42,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:44:42,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:42,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-31_00-44-42.log] [testng] 00:44:42,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@523cbb1b - End of configuration. [testng] [2024-10-31 00:44:42,247] [pool-1-thread-4] Initializing /data/brian/images/BLU.PCT: [testng] 00:44:42,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:44:42,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:42,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-31_00-44-42.log] [testng] 00:44:42,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cb74f7e - End of configuration. [testng] [2024-10-31 00:44:42,304] [pool-1-thread-3] Initializing /data/jqd/32bit.pict: [testng] 00:44:42,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:44:42,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:42,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-31_00-44-42.log] [testng] 00:44:42,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cbe01c8 - End of configuration. [testng] [2024-10-31 00:44:42,380] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 00:44:42,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:44:42,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:44:42,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-31_00-44-42.log] [testng] 00:44:42,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6846bddf - End of configuration. [testng] [2024-10-31 00:44:44,516] [pool-1-thread-11] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-10-31 00:44:44,566] [pool-1-thread-10] Initializing /data/brian/images/BLK.PCT: [testng] [2024-10-31 00:44:44,618] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2024-10-31 00:44:44,667] [pool-1-thread-1] Initializing /data/misc/swlogo.pict: [testng] [2024-10-31 00:44:44,717] [pool-1-thread-8] Initializing /data/misc/planet.pict: [testng] [2024-10-31 00:44:44,773] [pool-1-thread-12] Initializing /data/jqd/mire32.pict: [testng] [2024-10-31 00:44:44,817] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-10-31 00:44:44,871] [pool-1-thread-7] Initializing /data/wayne/PotatoMeristem.pict: [testng] [2024-10-31 00:44:45,027] [pool-1-thread-3] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-10-31 00:44:45,163] [pool-1-thread-9] Initializing /data/brian/images/RED.PCT: [testng] [2024-10-31 00:44:45,695] [pool-1-thread-5] Initializing /data/brian/images/VENUS.pct: [testng] [2024-10-31 00:44:45,763] [pool-1-thread-2] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-10-31 00:44:46,014] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS