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Started by upstream project "BIOFORMATS-test-repo" build number 240 originally caused by: Started by upstream project "Trigger" build number 265 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins13156349779790249898.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37765_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:32:07,472 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:32:07,474 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 01:32:07,474 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:32:07,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:32:07,475 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:32:07,475 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:32:07,476 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:32:07,476 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:32:07,476 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:32:07,477 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:32:07,477 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:32:07,477 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:32:07,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:32:07,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:32:07,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:32:07,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:32:07,677 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:32:07,677 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:32:07,677 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:32:07,678 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:32:07,678 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 01:32:07,679 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 01:32:07,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-31 01:32:07,689] [main] java.version = 21 [testng] 01:32:07,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:32:07,692 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:32:07,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-31_01-32-07.log] [testng] 01:32:07,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-31 01:32:07,738] [main] testng.directory = /data [testng] [2024-10-31 01:32:07,738] [main] testng.configDirectory = /config [testng] [2024-10-31 01:32:07,747] [main] testng.multiplier = 1.0 [testng] [2024-10-31 01:32:07,748] [main] testng.in-memory = false [testng] [2024-10-31 01:32:07,748] [main] testng.allow-missing = false [testng] [2024-10-31 01:32:07,748] [main] user.language = en [testng] [2024-10-31 01:32:07,748] [main] user.country = ${user.country} [testng] [2024-10-31 01:32:07,748] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-31 01:35:14,403] [main] ---------------------------------------- [testng] [2024-10-31 01:35:14,403] [main] Total files: 268 [testng] [2024-10-31 01:35:14,403] [main] Scan time: 186.655 s (696 ms/file) [testng] [2024-10-31 01:35:14,403] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-31 01:40:28,452] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] 01:40:28,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:40:28,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:28,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-31_01-40-28.log] [testng] 01:40:28,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18559f84 - End of configuration. [testng] [2024-10-31 01:40:29,827] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] 01:40:29,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:40:29,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:29,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-31_01-40-29.log] [testng] 01:40:29,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@474cd5c9 - End of configuration. [testng] [2024-10-31 01:40:30,281] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] 01:40:30,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:40:30,281 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:30,282 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-31_01-40-30.log] [testng] 01:40:30,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@311818bb - End of configuration. [testng] [2024-10-31 01:40:30,906] [pool-1-thread-10] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] 01:40:30,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:40:30,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:30,907 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-31_01-40-30.log] [testng] 01:40:30,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4981d145 - End of configuration. [testng] [2024-10-31 01:40:31,362] [pool-1-thread-9] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] 01:40:31,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:40:31,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:31,363 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-31_01-40-31.log] [testng] 01:40:31,364 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62158461 - End of configuration. [testng] [2024-10-31 01:40:31,777] [pool-1-thread-8] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] 01:40:31,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:40:31,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:31,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-31_01-40-31.log] [testng] 01:40:31,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a31e4f3 - End of configuration. [testng] [2024-10-31 01:40:32,188] [pool-1-thread-7] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] 01:40:32,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:40:32,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:32,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-31_01-40-32.log] [testng] 01:40:32,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@104fb57a - End of configuration. [testng] [2024-10-31 01:40:32,950] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] 01:40:32,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:40:32,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:32,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-31_01-40-32.log] [testng] 01:40:32,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6625c490 - End of configuration. [testng] [2024-10-31 01:40:33,284] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] 01:40:33,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:40:33,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:33,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-31_01-40-33.log] [testng] 01:40:33,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aa9cfbf - End of configuration. [testng] [2024-10-31 01:40:33,651] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] 01:40:33,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:40:33,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:33,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-31_01-40-33.log] [testng] 01:40:33,652 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4203f11b - End of configuration. [testng] [2024-10-31 01:40:34,231] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] 01:40:34,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:40:34,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:34,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-31_01-40-34.log] [testng] 01:40:34,232 |-INFO in ch.qos.logback.core.sift.SiftProcessor@601b169e - End of configuration. [testng] [2024-10-31 01:40:34,677] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] 01:40:34,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:40:34,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:40:34,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-31_01-40-34.log] [testng] 01:40:34,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aa3ea57 - End of configuration. [testng] [2024-10-31 01:40:39,344] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-10-31 01:40:40,699] [pool-1-thread-6] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-10-31 01:40:41,149] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-10-31 01:40:41,602] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-10-31 01:40:41,821] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-10-31 01:40:43,043] [pool-1-thread-9] Initializing /data/steve/FITS/M13.fits: [testng] [2024-10-31 01:40:43,225] [pool-1-thread-3] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-10-31 01:40:43,742] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-10-31 01:40:46,393] [pool-1-thread-9] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-10-31 01:40:47,775] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-10-31 01:40:49,349] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-10-31 01:40:49,773] [pool-1-thread-2] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-10-31 01:40:50,309] [pool-1-thread-4] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-10-31 01:40:52,262] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-10-31 01:40:54,205] [pool-1-thread-11] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-10-31 01:40:55,050] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-10-31 01:40:55,600] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-10-31 01:40:57,247] [pool-1-thread-6] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-10-31 01:40:57,600] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-10-31 01:41:00,411] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-10-31 01:41:00,918] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-10-31 01:41:01,952] [pool-1-thread-10] Initializing /data/steve/FITS/M51.fits: [testng] [2024-10-31 01:41:02,108] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-10-31 01:41:04,416] [pool-1-thread-2] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-10-31 01:41:06,110] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-10-31 01:41:06,417] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-10-31 01:41:06,607] [pool-1-thread-1] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] [2024-10-31 01:41:08,537] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-10-31 01:41:10,527] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [2024-10-31 01:41:11,646] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-10-31 01:41:13,402] [pool-1-thread-4] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-10-31 01:41:15,327] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] [2024-10-31 01:41:16,097] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-10-31 01:41:18,268] [pool-1-thread-9] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-10-31 01:41:19,275] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-10-31 01:41:19,908] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-10-31 01:41:22,209] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-10-31 01:41:23,045] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-10-31 01:41:24,829] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-10-31 01:41:26,811] [pool-1-thread-2] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-10-31 01:41:28,821] [pool-1-thread-6] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-10-31 01:41:29,675] [pool-1-thread-1] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-10-31 01:41:31,410] [pool-1-thread-11] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-10-31 01:41:32,174] [pool-1-thread-10] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-10-31 01:41:32,634] [pool-1-thread-9] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] [2024-10-31 01:41:34,697] [pool-1-thread-4] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-10-31 01:41:35,390] [pool-1-thread-5] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-10-31 01:41:38,575] [pool-1-thread-12] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] [2024-10-31 01:41:40,006] [pool-1-thread-10] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-10-31 01:41:41,561] [pool-1-thread-7] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-10-31 01:41:42,626] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-10-31 01:41:43,917] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-10-31 01:41:44,396] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] [2024-10-31 01:41:45,603] [pool-1-thread-12] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-10-31 01:41:47,251] [pool-1-thread-7] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-10-31 01:41:48,005] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-10-31 01:41:48,707] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-10-31 01:41:49,109] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-10-31 01:41:49,602] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-10-31 01:41:49,960] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-10-31 01:41:52,330] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-10-31 01:41:53,377] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-10-31 01:41:53,916] [pool-1-thread-4] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-10-31 01:41:55,692] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] [2024-10-31 01:41:56,101] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-10-31 01:41:56,765] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] [2024-10-31 01:41:57,363] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-10-31 01:41:59,221] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-10-31 01:41:59,860] [pool-1-thread-6] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-10-31 01:42:00,495] [pool-1-thread-10] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-10-31 01:42:01,959] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-10-31 01:42:03,856] [pool-1-thread-12] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-10-31 01:42:05,783] [pool-1-thread-3] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-10-31 01:42:06,640] [pool-1-thread-11] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-10-31 01:42:07,209] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-10-31 01:42:07,782] [pool-1-thread-7] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-10-31 01:42:08,443] [pool-1-thread-9] Initializing /data/steve/FITS/M104.fits: [testng] [2024-10-31 01:42:10,095] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-10-31 01:42:10,498] [pool-1-thread-2] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-10-31 01:42:11,172] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-10-31 01:42:11,744] [pool-1-thread-10] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-10-31 01:42:13,907] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-10-31 01:42:15,353] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-10-31 01:42:15,918] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] [2024-10-31 01:42:16,827] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-10-31 01:42:17,276] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-10-31 01:42:18,933] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-10-31 01:42:19,477] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-10-31 01:42:19,759] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-10-31 01:42:20,307] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-10-31 01:42:20,886] [pool-1-thread-5] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-10-31 01:42:21,303] [pool-1-thread-12] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-10-31 01:42:24,006] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-10-31 01:42:24,809] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-10-31 01:42:25,602] [pool-1-thread-1] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-10-31 01:42:27,242] [pool-1-thread-4] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-10-31 01:42:27,800] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-10-31 01:42:28,025] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-10-31 01:42:29,475] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-10-31 01:42:30,140] [pool-1-thread-9] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-10-31 01:42:30,944] [pool-1-thread-10] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-10-31 01:42:32,424] [pool-1-thread-8] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-10-31 01:42:34,576] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-10-31 01:42:35,122] [pool-1-thread-6] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-10-31 01:42:35,710] [pool-1-thread-11] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-10-31 01:42:36,232] [pool-1-thread-3] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] [2024-10-31 01:42:37,952] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-10-31 01:42:39,606] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-10-31 01:42:40,072] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] [2024-10-31 01:42:41,613] [pool-1-thread-7] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-10-31 01:42:43,164] [pool-1-thread-11] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-10-31 01:42:44,168] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-10-31 01:42:45,759] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-10-31 01:42:47,225] [pool-1-thread-2] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-10-31 01:42:47,818] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-10-31 01:42:48,577] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-10-31 01:42:51,755] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-10-31 01:42:53,336] [pool-1-thread-8] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-10-31 01:42:53,993] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-10-31 01:42:54,766] [pool-1-thread-4] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-10-31 01:42:55,694] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-10-31 01:42:56,206] [pool-1-thread-11] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-10-31 01:42:57,057] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-10-31 01:42:58,030] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-10-31 01:42:58,640] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-10-31 01:42:58,966] [pool-1-thread-12] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-10-31 01:43:00,620] [pool-1-thread-5] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-10-31 01:43:01,166] [pool-1-thread-6] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-10-31 01:43:01,650] [pool-1-thread-8] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-10-31 01:43:02,549] [pool-1-thread-10] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-10-31 01:43:04,784] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-10-31 01:43:05,287] [pool-1-thread-1] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-10-31 01:43:05,755] [pool-1-thread-2] Initializing /data/steve/TIFF/ta269 TIFF: [testng] [2024-10-31 01:43:07,332] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-10-31 01:43:07,831] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-10-31 01:43:08,250] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-10-31 01:43:08,815] [pool-1-thread-4] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-10-31 01:43:09,279] [pool-1-thread-5] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-10-31 01:43:09,941] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-10-31 01:43:11,588] [pool-1-thread-6] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-10-31 01:43:12,306] [pool-1-thread-12] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-10-31 01:43:13,857] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] [2024-10-31 01:43:15,443] [pool-1-thread-1] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-10-31 01:43:17,877] [pool-1-thread-3] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-10-31 01:43:18,330] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-10-31 01:43:18,667] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-10-31 01:43:19,433] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-10-31 01:43:19,865] [pool-1-thread-10] Initializing /data/steve/SBIG/M81 M 40s: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 minutes 26 seconds Finished: SUCCESS