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Started by upstream project "BIOFORMATS-test-repo" build number 240 originally caused by: Started by upstream project "Trigger" build number 265 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins663942274440953498.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37832_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 03:51:42,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 03:51:42,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - No custom configurators were discovered as a service. [testng] 03:51:42,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:51:42,881 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:51:42,881 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:51:42,882 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:51:42,882 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:51:42,882 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:51:42,882 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:51:42,883 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:51:42,883 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:51:42,883 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:51:43,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:51:43,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:51:43,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:51:43,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:51:43,062 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:51:43,062 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:51:43,062 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:51:43,063 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:51:43,063 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@29215f06 - End of configuration. [testng] 03:51:43,063 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@b9b00e0 - Registering current configuration as safe fallback point [testng] 03:51:43,064 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4f67eb2a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 182 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-10-31 03:51:43,072] [main] java.version = 21 [testng] 03:51:43,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:51:43,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:43,114 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-10-31_03-51-43.log] [testng] 03:51:43,116 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b919693 - End of configuration. [testng] [2024-10-31 03:51:43,117] [main] testng.directory = /data [testng] [2024-10-31 03:51:43,118] [main] testng.configDirectory = /config [testng] [2024-10-31 03:51:43,126] [main] testng.multiplier = 1.0 [testng] [2024-10-31 03:51:43,127] [main] testng.in-memory = false [testng] [2024-10-31 03:51:43,127] [main] testng.allow-missing = false [testng] [2024-10-31 03:51:43,127] [main] user.language = en [testng] [2024-10-31 03:51:43,127] [main] user.country = ${user.country} [testng] [2024-10-31 03:51:43,127] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-10-31 03:51:58,000] [main] ---------------------------------------- [testng] [2024-10-31 03:51:58,000] [main] Total files: 31 [testng] [2024-10-31 03:51:58,000] [main] Scan time: 14.873 s (479 ms/file) [testng] [2024-10-31 03:51:58,001] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-10-31 03:52:15,669] [pool-1-thread-1] Initializing /data/kraig/head.jp2: [testng] 03:52:15,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:52:15,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:15,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-10-31_03-52-15.log] [testng] 03:52:15,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33a50656 - End of configuration. [testng] [2024-10-31 03:52:16,225] [pool-1-thread-12] Initializing /data/misc/clown-rgb.jp2: [testng] 03:52:16,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:52:16,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:16,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-10-31_03-52-16.log] [testng] 03:52:16,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1af6b47a - End of configuration. [testng] [2024-10-31 03:52:16,633] [pool-1-thread-11] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] 03:52:16,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:52:16,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:16,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-10-31_03-52-16.log] [testng] 03:52:16,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e1080e5 - End of configuration. [testng] [2024-10-31 03:52:17,318] [pool-1-thread-10] Initializing /data/venu/Multichannel 3a.jpg: [testng] 03:52:17,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:52:17,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:17,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-10-31_03-52-17.log] [testng] 03:52:17,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19b532 - End of configuration. [testng] [2024-10-31 03:52:17,464] [pool-1-thread-9] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 03:52:17,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:52:17,464 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:17,465 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-10-31_03-52-17.log] [testng] 03:52:17,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4301436a - End of configuration. [testng] [2024-10-31 03:52:18,423] [pool-1-thread-8] Initializing /data/vikram/Captured 3.jp2: [testng] 03:52:18,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:52:18,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:18,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-10-31_03-52-18.log] [testng] 03:52:18,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cd74fe7 - End of configuration. [testng] [2024-10-31 03:52:18,973] [pool-1-thread-7] Initializing /data/misc/clown-rgb.jpc: [testng] 03:52:18,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:52:18,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:18,974 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-10-31_03-52-18.log] [testng] 03:52:18,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4315aeaf - End of configuration. [testng] [2024-10-31 03:52:19,520] [pool-1-thread-6] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] 03:52:19,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:52:19,521 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:19,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-10-31_03-52-19.log] [testng] 03:52:19,522 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f904441 - End of configuration. [testng] [2024-10-31 03:52:20,029] [pool-1-thread-5] Initializing /data/big-images/2kx2k.jpf: [testng] 03:52:20,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:52:20,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:20,030 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-10-31_03-52-20.log] [testng] 03:52:20,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b4788b0 - End of configuration. [testng] [2024-10-31 03:52:20,411] [pool-1-thread-4] Initializing /data/david/multichannel-2d test.jp2: [testng] 03:52:20,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:52:20,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:20,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-10-31_03-52-20.log] [testng] 03:52:20,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@121fb78d - End of configuration. [testng] [2024-10-31 03:52:20,810] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] 03:52:20,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:52:20,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:20,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-10-31_03-52-20.log] [testng] 03:52:20,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@661d39bb - End of configuration. [testng] [2024-10-31 03:52:21,184] [pool-1-thread-2] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] 03:52:21,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:52:21,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:52:21,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-10-31_03-52-21.log] [testng] 03:52:21,186 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f9cbfa0 - End of configuration. [testng] [2024-10-31 03:52:26,013] [pool-1-thread-10] Initializing /data/vikram/Captured 5.jp2: [testng] [2024-10-31 03:52:27,019] [pool-1-thread-8] Initializing /data/david/000000_000001.jpx: [testng] [2024-10-31 03:52:27,556] [pool-1-thread-7] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] [2024-10-31 03:52:27,947] [pool-1-thread-12] Initializing /data/vikram/Captured 4.jp2: [testng] [2024-10-31 03:52:28,334] [pool-1-thread-1] Initializing /data/misc/clown-rgb.jbig: [testng] [2024-10-31 03:52:31,293] [pool-1-thread-9] Initializing /data/venu/Multichannel 3.jp2: [testng] [2024-10-31 03:52:31,852] [pool-1-thread-6] Initializing /data/frans/flower.jp2: [testng] [2024-10-31 03:52:34,388] [pool-1-thread-10] Initializing /data/aryeh/flour 12.jp2: [testng] [2024-10-31 03:52:35,039] [pool-1-thread-12] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2024-10-31 03:52:35,568] [pool-1-thread-1] Initializing /data/big-images/4kx4k.jpf: [testng] [2024-10-31 03:52:37,241] [pool-1-thread-5] Initializing /data/vikram/Captured 2.jp2: [testng] [2024-10-31 03:52:38,931] [pool-1-thread-8] Initializing /data/big-images/8kx8k.jpf: [testng] [2024-10-31 03:52:40,022] [pool-1-thread-3] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2024-10-31 03:52:41,039] [pool-1-thread-10] Initializing /data/vikram/Captured 1.jp2: [testng] [2024-10-31 03:52:42,819] [pool-1-thread-5] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2024-10-31 03:52:44,688] [pool-1-thread-10] Initializing /data/david/C1R1_FOS.jp2: [testng] [2024-10-31 03:52:45,203] [pool-1-thread-7] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] [2024-10-31 03:52:46,347] [pool-1-thread-3] Initializing /data/david/cy5-tph.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 minutes 17 seconds Finished: SUCCESS