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Started by upstream project "BIOFORMATS-test-repo" build number 241 originally caused by: Started by upstream project "Trigger" build number 266 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins10113645394407786161.sh + '[' lim = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37855_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:23:54,767 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:23:54,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:23:54,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:54,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:23:54,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:23:54,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:23:54,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:23:54,770 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:54,771 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:23:54,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:23:54,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:23:54,771 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:23:55,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:23:55,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:23:55,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:23:55,050 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:23:55,058 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:23:55,058 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:23:55,058 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:23:55,059 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:23:55,059 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:23:55,060 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:23:55,060 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 289 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-01 00:23:55,070] [main] java.version = 1.8.0_342 [testng] 00:23:55,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:23:55,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:23:55,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-01_00-23-55.log] [testng] 00:23:55,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-01 00:23:55,124] [main] testng.directory = /data [testng] [2024-11-01 00:23:55,125] [main] testng.configDirectory = /config [testng] [2024-11-01 00:23:55,137] [main] testng.multiplier = 1.0 [testng] [2024-11-01 00:23:55,137] [main] testng.in-memory = false [testng] [2024-11-01 00:23:55,137] [main] testng.allow-missing = false [testng] [2024-11-01 00:23:55,137] [main] user.language = en [testng] [2024-11-01 00:23:55,137] [main] user.country = ${user.country} [testng] [2024-11-01 00:23:55,138] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-01 00:23:55,697] [main] ---------------------------------------- [testng] [2024-11-01 00:23:55,697] [main] Total files: 21 [testng] [2024-11-01 00:23:55,697] [main] Scan time: 0.559 s (26 ms/file) [testng] [2024-11-01 00:23:55,697] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-01 00:24:00,831] [pool-1-thread-1] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:24:00,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:24:00,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:00,833 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-01_00-24-00.log] [testng] 00:24:00,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50ee99f5 - End of configuration. [testng] [2024-11-01 00:24:01,074] [pool-1-thread-12] Initializing /data/venu/Kontrolle0016.lim: [testng] 00:24:01,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:24:01,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:01,075 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-01_00-24-01.log] [testng] 00:24:01,076 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5df27878 - End of configuration. [testng] [2024-11-01 00:24:01,282] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 00:24:01,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:24:01,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:01,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-01_00-24-01.log] [testng] 00:24:01,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@507eb1c0 - End of configuration. [testng] [2024-11-01 00:24:01,498] [pool-1-thread-10] Initializing /data/venu/Kontrolle0010.lim: [testng] 00:24:01,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:24:01,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:01,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-01_00-24-01.log] [testng] 00:24:01,500 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c48bf65 - End of configuration. [testng] [2024-11-01 00:24:01,701] [pool-1-thread-9] Initializing /data/venu/Kontrolle0007.lim: [testng] 00:24:01,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:24:01,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:01,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-01_00-24-01.log] [testng] 00:24:01,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ce6dcd4 - End of configuration. [testng] [2024-11-01 00:24:01,931] [pool-1-thread-8] Initializing /data/venu/Kontrolle0018.lim: [testng] 00:24:01,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:24:01,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:01,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-01_00-24-01.log] [testng] 00:24:01,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@880136d - End of configuration. [testng] [2024-11-01 00:24:02,283] [pool-1-thread-7] Initializing /data/venu/Kontrolle0009.lim: [testng] 00:24:02,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:24:02,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:02,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-01_00-24-02.log] [testng] 00:24:02,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3629b908 - End of configuration. [testng] [2024-11-01 00:24:02,705] [pool-1-thread-6] Initializing /data/venu/Kontrolle0008.lim: [testng] 00:24:02,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:24:02,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:02,706 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-01_00-24-02.log] [testng] 00:24:02,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11e77647 - End of configuration. [testng] [2024-11-01 00:24:03,059] [pool-1-thread-5] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:24:03,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:24:03,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:03,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-01_00-24-03.log] [testng] 00:24:03,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52c2d503 - End of configuration. [testng] [2024-11-01 00:24:03,391] [pool-1-thread-4] Initializing /data/venu/Kontrolle0004.lim: [testng] 00:24:03,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:24:03,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:03,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-01_00-24-03.log] [testng] 00:24:03,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cbcc1e0 - End of configuration. [testng] [2024-11-01 00:24:03,617] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim: [testng] 00:24:03,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:24:03,617 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:03,618 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-01_00-24-03.log] [testng] 00:24:03,618 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30039acd - End of configuration. [testng] [2024-11-01 00:24:03,944] [pool-1-thread-2] Initializing /data/venu/Kontrolle0001.lim: [testng] 00:24:03,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:24:03,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:24:03,944 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-01_00-24-03.log] [testng] 00:24:03,945 |-INFO in ch.qos.logback.core.sift.SiftProcessor@92259f6 - End of configuration. [testng] [2024-11-01 00:24:08,503] [pool-1-thread-6] Initializing /data/venu/Kontrolle0020.lim: [testng] [2024-11-01 00:24:08,709] [pool-1-thread-1] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-11-01 00:24:08,912] [pool-1-thread-4] Initializing /data/venu/Kontrolle0013.lim: [testng] [2024-11-01 00:24:09,134] [pool-1-thread-5] Initializing /data/venu/Kontrolle0021.lim: [testng] [2024-11-01 00:24:09,336] [pool-1-thread-11] Initializing /data/venu/Kontrolle0017.lim: [testng] [2024-11-01 00:24:09,531] [pool-1-thread-2] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-11-01 00:24:09,735] [pool-1-thread-7] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-11-01 00:24:09,942] [pool-1-thread-9] Initializing /data/venu/Kontrolle0012.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 20 seconds Finished: SUCCESS