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Started by upstream project "BIOFORMATS-test-repo" build number 241 originally caused by: Started by upstream project "Trigger" build number 266 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins16333421100928570254.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37882_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:43:50,071 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:43:50,073 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:43:50,073 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:43:50,074 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:43:50,075 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:43:50,075 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:43:50,075 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:43:50,075 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:43:50,076 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:43:50,076 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:43:50,076 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:43:50,076 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:43:50,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:43:50,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:43:50,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:43:50,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:43:50,365 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:43:50,365 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:43:50,365 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:43:50,366 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:43:50,366 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:43:50,367 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:43:50,367 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 291 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-01 00:43:50,377] [main] java.version = 1.8.0_342 [testng] 00:43:50,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:43:50,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:50,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-01_00-43-50.log] [testng] 00:43:50,427 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-01 00:43:50,429] [main] testng.directory = /data [testng] [2024-11-01 00:43:50,429] [main] testng.configDirectory = /config [testng] [2024-11-01 00:43:50,441] [main] testng.multiplier = 1.0 [testng] [2024-11-01 00:43:50,442] [main] testng.in-memory = false [testng] [2024-11-01 00:43:50,442] [main] testng.allow-missing = false [testng] [2024-11-01 00:43:50,442] [main] user.language = en [testng] [2024-11-01 00:43:50,442] [main] user.country = ${user.country} [testng] [2024-11-01 00:43:50,442] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-01 00:44:05,300] [main] ---------------------------------------- [testng] [2024-11-01 00:44:05,300] [main] Total files: 259 [testng] [2024-11-01 00:44:05,301] [main] Scan time: 14.858 s (57 ms/file) [testng] [2024-11-01 00:44:05,301] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-01 00:50:30,120] [pool-1-thread-1] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] 00:50:30,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:50:30,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:30,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-01_00-50-30.log] [testng] 00:50:30,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32dd2e56 - End of configuration. [testng] [2024-11-01 00:50:30,706] [pool-1-thread-12] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] 00:50:30,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:50:30,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:30,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-01_00-50-30.log] [testng] 00:50:30,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c1232aa - End of configuration. [testng] [2024-11-01 00:50:30,880] [pool-1-thread-11] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] 00:50:30,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:50:30,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:30,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-01_00-50-30.log] [testng] 00:50:30,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b44cad1 - End of configuration. [testng] [2024-11-01 00:50:32,622] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] 00:50:32,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:50:32,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:32,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-01_00-50-32.log] [testng] 00:50:32,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@249878e8 - End of configuration. [testng] [2024-11-01 00:50:33,048] [pool-1-thread-9] Initializing /data/pedro/plv-test.oib: [testng] 00:50:33,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:50:33,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:33,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-01_00-50-33.log] [testng] 00:50:33,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43fedfb2 - End of configuration. [testng] [2024-11-01 00:50:33,233] [pool-1-thread-8] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] 00:50:33,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:50:33,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:33,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-01_00-50-33.log] [testng] 00:50:33,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d970f69 - End of configuration. [testng] [2024-11-01 00:50:33,428] [pool-1-thread-7] Initializing /data/molly/11OCT4.OIF: [testng] 00:50:33,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:50:33,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:33,429 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-01_00-50-33.log] [testng] 00:50:33,430 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c9a39a - End of configuration. [testng] [2024-11-01 00:50:36,194] [pool-1-thread-6] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] 00:50:36,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:50:36,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:36,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-01_00-50-36.log] [testng] 00:50:36,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@732354e5 - End of configuration. [testng] [2024-11-01 00:50:36,444] [pool-1-thread-5] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] 00:50:36,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:50:36,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:36,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-01_00-50-36.log] [testng] 00:50:36,445 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1430ad9d - End of configuration. [testng] [2024-11-01 00:50:36,609] [pool-1-thread-4] Initializing /data/molly/11OCT5.OIF: [testng] 00:50:36,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:50:36,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:36,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-01_00-50-36.log] [testng] 00:50:36,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c6d292f - End of configuration. [testng] [2024-11-01 00:50:39,147] [pool-1-thread-3] Initializing /data/glen/Null file/test no change.oif: [testng] 00:50:39,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:50:39,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:39,148 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-01_00-50-39.log] [testng] 00:50:39,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@80319ca - End of configuration. [testng] [2024-11-01 00:50:39,326] [pool-1-thread-2] Initializing /data/sten/01.oib: [testng] 00:50:39,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:50:39,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:50:39,326 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-01_00-50-39.log] [testng] 00:50:39,327 |-INFO in ch.qos.logback.core.sift.SiftProcessor@567df4a8 - End of configuration. [testng] [2024-11-01 00:50:43,083] [pool-1-thread-12] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-01 00:50:43,146] [pool-1-thread-2] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-11-01 00:50:43,542] [pool-1-thread-9] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-01 00:50:44,712] [pool-1-thread-8] Initializing /data/glen/seqlinestack.oif: [testng] [2024-11-01 00:50:47,065] [pool-1-thread-6] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-01 00:50:47,455] [pool-1-thread-10] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-01 00:50:48,287] [pool-1-thread-12] Initializing /data/michael/CELL3.oib: [testng] [2024-11-01 00:50:49,337] [pool-1-thread-10] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-11-01 00:50:50,223] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-01 00:50:51,288] [pool-1-thread-12] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-01 00:50:52,705] [pool-1-thread-10] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-01 00:51:15,636] [pool-1-thread-6] Initializing /data/glen/simulstack.oib: [testng] [2024-11-01 00:51:16,119] [pool-1-thread-5] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-01 00:51:22,623] [pool-1-thread-12] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-01 00:51:22,985] [pool-1-thread-3] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-11-01 00:51:25,035] [pool-1-thread-6] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-01 00:51:25,381] [pool-1-thread-2] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-01 00:51:26,173] [pool-1-thread-3] Initializing /data/monica/Image0056.oif: [testng] [2024-11-01 00:51:26,596] [pool-1-thread-12] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-01 00:51:28,186] [pool-1-thread-6] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-01 00:51:29,114] [pool-1-thread-12] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-01 00:51:34,479] [pool-1-thread-6] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-11-01 00:51:36,790] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-01 00:51:42,045] [pool-1-thread-6] Initializing /data/glen/111407.oif: [testng] [2024-11-01 00:51:43,759] [pool-1-thread-2] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-01 00:51:53,151] [pool-1-thread-3] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-01 00:51:57,488] [pool-1-thread-12] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-01 00:52:16,196] [pool-1-thread-3] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-01 00:52:19,799] [pool-1-thread-3] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-11-01 00:52:22,735] [pool-1-thread-3] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-01 00:52:25,195] [pool-1-thread-3] Initializing /data/glen/Image0002.oif: [testng] [2024-11-01 00:55:42,938] [pool-1-thread-9] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-01 00:55:48,001] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-01 00:55:53,003] [pool-1-thread-9] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-01 00:57:14,643] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-11-01 00:57:20,168] [pool-1-thread-1] Initializing /data/marc/V0606J.oib: [testng] [2024-11-01 00:57:37,525] [pool-1-thread-1] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-11-01 00:58:07,397] [pool-1-thread-12] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-01 00:58:09,894] [pool-1-thread-12] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-01 00:58:17,755] [pool-1-thread-12] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-11-01 00:58:22,836] [pool-1-thread-12] Initializing /data/yasunori/series_1.oib: [testng] [2024-11-01 00:58:27,048] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-11-01 00:58:29,737] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-01 00:58:34,715] [pool-1-thread-1] Initializing /data/johannes/step2.bmp: [testng] [2024-11-01 00:58:35,877] [pool-1-thread-12] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-01 00:58:37,603] [pool-1-thread-1] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-11-01 00:58:41,817] [pool-1-thread-12] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-01 00:58:46,795] [pool-1-thread-12] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-01 00:59:56,920] [pool-1-thread-9] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-11-01 01:00:01,742] [pool-1-thread-9] Initializing /data/david/Image0016.oif: [testng] [2024-11-01 01:01:01,000] [pool-1-thread-9] Initializing /data/molly/11OCT2.OIF: [testng] [2024-11-01 01:01:22,640] [pool-1-thread-1] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-01 01:01:24,911] [pool-1-thread-12] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-01 01:01:47,172] [pool-1-thread-12] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-01 01:02:15,942] [pool-1-thread-12] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-01 01:02:20,809] [pool-1-thread-12] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-01 01:02:25,398] [pool-1-thread-12] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-01 01:02:31,790] [pool-1-thread-12] Initializing /data/karl/Image0009.oib: [testng] [2024-11-01 01:02:34,752] [pool-1-thread-12] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-11-01 01:02:39,592] [pool-1-thread-12] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-01 01:02:51,064] [pool-1-thread-6] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-01 01:02:54,851] [pool-1-thread-6] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-01 01:03:00,346] [pool-1-thread-6] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-01 01:03:02,974] [pool-1-thread-6] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-01 01:03:23,342] [pool-1-thread-1] Initializing /data/aryeh/1h.oib: [testng] [2024-11-01 01:03:33,016] [pool-1-thread-1] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-01 01:03:37,052] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-01 01:03:43,630] [pool-1-thread-1] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-01 01:03:47,909] [pool-1-thread-1] Initializing /data/brian/FLIP.oib: [testng] [2024-11-01 01:03:54,094] [pool-1-thread-1] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-01 01:03:57,820] [pool-1-thread-1] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-01 01:04:02,810] [pool-1-thread-1] Initializing /data/simon/never_worked.oib: [testng] [2024-11-01 01:04:06,369] [pool-1-thread-1] Initializing /data/johannes/step1.bmp: [testng] [2024-11-01 01:04:09,128] [pool-1-thread-1] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-11-01 01:04:13,785] [pool-1-thread-1] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-01 01:04:17,526] [pool-1-thread-1] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-11-01 01:04:20,674] [pool-1-thread-7] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-01 01:04:29,359] [pool-1-thread-4] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-01 01:04:32,832] [pool-1-thread-1] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-01 01:04:33,857] [pool-1-thread-4] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-01 01:04:37,529] [pool-1-thread-1] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-01 01:04:38,271] [pool-1-thread-4] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-01 01:04:41,289] [pool-1-thread-1] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-01 01:04:45,615] [pool-1-thread-1] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-01 01:04:49,588] [pool-1-thread-1] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-01 01:04:53,247] [pool-1-thread-1] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-01 01:04:56,551] [pool-1-thread-1] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-01 01:05:11,316] [pool-1-thread-4] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-11-01 01:06:14,445] [pool-1-thread-1] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-01 01:06:19,051] [pool-1-thread-1] Initializing /data/david/Image0016.oib: [testng] [2024-11-01 01:06:22,961] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-01 01:06:29,893] [pool-1-thread-1] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-01 01:06:42,546] [pool-1-thread-3] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-01 01:06:46,646] [pool-1-thread-3] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-01 01:07:02,430] [pool-1-thread-2] Initializing /data/allan/62909#1.oib: [testng] [2024-11-01 01:07:06,131] [pool-1-thread-2] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-01 01:08:38,185] [pool-1-thread-5] Initializing /data/glen/simulstack.oif: [testng] [2024-11-01 01:08:54,359] [pool-1-thread-8] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-01 01:09:01,256] [pool-1-thread-8] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-01 01:11:02,634] [pool-1-thread-11] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-01 01:11:07,038] [pool-1-thread-11] Initializing /data/christian/20min.oif: [testng] [2024-11-01 01:11:22,116] [pool-1-thread-11] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-01 01:11:26,036] [pool-1-thread-11] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-01 01:11:51,335] [pool-1-thread-11] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-01 01:12:36,608] [pool-1-thread-11] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-01 01:14:45,574] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-01 01:14:51,040] [pool-1-thread-3] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-01 01:14:54,144] [pool-1-thread-3] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-01 01:14:58,243] [pool-1-thread-3] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-01 01:15:00,970] [pool-1-thread-3] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-01 01:15:07,100] [pool-1-thread-3] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-01 01:15:12,544] [pool-1-thread-3] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-01 01:21:08,960] [pool-1-thread-5] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-01 01:22:09,354] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-01 01:22:17,901] [pool-1-thread-5] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-01 01:22:54,394] [pool-1-thread-7] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-01 01:22:59,623] [pool-1-thread-7] Initializing /data/johannes/step4.bmp: [testng] [2024-11-01 01:23:02,365] [pool-1-thread-7] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-01 01:23:04,941] [pool-1-thread-7] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-01 01:23:11,292] [pool-1-thread-7] Initializing /data/johannes/step3.bmp: [testng] [2024-11-01 01:23:13,797] [pool-1-thread-7] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-01 01:23:18,602] [pool-1-thread-7] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-01 01:23:33,344] [pool-1-thread-7] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-01 01:23:42,346] [pool-1-thread-1] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-01 01:23:43,528] [pool-1-thread-7] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-11-01 01:24:31,541] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-01 01:24:35,568] [pool-1-thread-1] Initializing /data/jae/Image0001.oib: [testng] [2024-11-01 01:24:38,150] [pool-1-thread-12] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-01 01:24:41,792] [pool-1-thread-1] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-11-01 01:25:24,129] [pool-1-thread-12] Initializing /data/marc/V0606L.oib: [testng] [2024-11-01 01:25:39,983] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-01 01:25:45,570] [pool-1-thread-12] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] 02:27:08,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:27:08,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:27:08,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-01_02-27-08.log] [testng] 02:27:08,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dc784b0 - End of configuration. [testng] 02:32:03,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:32:03,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:03,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-01_02-32-03.log] [testng] 02:32:03,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42becaf6 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 108 minutes 16 seconds Finished: SUCCESS