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Started by upstream project "BIOFORMATS-test-repo" build number 241 originally caused by: Started by upstream project "Trigger" build number 266 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins2562479884844563504.sh + '[' pict = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37891_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:46:59,539 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:46:59,541 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 00:46:59,541 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:46:59,542 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:46:59,542 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:46:59,542 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:46:59,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:46:59,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:46:59,543 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:46:59,543 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:46:59,544 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:46:59,544 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:46:59,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:46:59,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:46:59,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:46:59,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:46:59,797 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:46:59,797 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:46:59,797 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:46:59,798 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:46:59,798 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 00:46:59,799 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 00:46:59,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 256 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-01 00:46:59,809] [main] java.version = 1.8.0_342 [testng] 00:46:59,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:46:59,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:46:59,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-01_00-46-59.log] [testng] 00:46:59,857 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-01 00:46:59,859] [main] testng.directory = /data [testng] [2024-11-01 00:46:59,859] [main] testng.configDirectory = /config [testng] [2024-11-01 00:46:59,872] [main] testng.multiplier = 1.0 [testng] [2024-11-01 00:46:59,872] [main] testng.in-memory = false [testng] [2024-11-01 00:46:59,872] [main] testng.allow-missing = false [testng] [2024-11-01 00:46:59,872] [main] user.language = en [testng] [2024-11-01 00:46:59,872] [main] user.country = ${user.country} [testng] [2024-11-01 00:46:59,872] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-01 00:47:00,505] [main] ---------------------------------------- [testng] [2024-11-01 00:47:00,505] [main] Total files: 25 [testng] [2024-11-01 00:47:00,505] [main] Scan time: 0.633 s (25 ms/file) [testng] [2024-11-01 00:47:00,506] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-01 00:47:03,098] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 00:47:03,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:47:03,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:03,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-01_00-47-03.log] [testng] 00:47:03,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a4f6239 - End of configuration. [testng] [2024-11-01 00:47:03,193] [pool-1-thread-12] Initializing /data/jqd/mire32.pict: [testng] 00:47:03,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:47:03,194 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:03,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-01_00-47-03.log] [testng] 00:47:03,195 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b7a81a6 - End of configuration. [testng] [2024-11-01 00:47:03,236] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B24.PCT: [testng] 00:47:03,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:47:03,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:03,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-01_00-47-03.log] [testng] 00:47:03,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a134f0 - End of configuration. [testng] [2024-11-01 00:47:03,282] [pool-1-thread-10] Initializing /data/misc/planet2.pict: [testng] 00:47:03,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:47:03,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:03,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-01_00-47-03.log] [testng] 00:47:03,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8c090de - End of configuration. [testng] [2024-11-01 00:47:03,339] [pool-1-thread-9] Initializing /data/brian/images/GRN.PCT: [testng] 00:47:03,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:47:03,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:03,340 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-01_00-47-03.log] [testng] 00:47:03,340 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15b5a86c - End of configuration. [testng] [2024-11-01 00:47:03,386] [pool-1-thread-8] Initializing /data/misc/planet.png: [testng] 00:47:03,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:47:03,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:03,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-01_00-47-03.log] [testng] 00:47:03,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44451871 - End of configuration. [testng] [2024-11-01 00:47:03,394] [pool-1-thread-7] Initializing /data/brian/images/VENUS.pct: [testng] 00:47:03,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:47:03,394 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:03,395 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-01_00-47-03.log] [testng] 00:47:03,395 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75e20353 - End of configuration. [testng] [2024-11-01 00:47:03,445] [pool-1-thread-6] Initializing /data/brian/images/RED.PCT: [testng] 00:47:03,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:47:03,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:03,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-01_00-47-03.log] [testng] 00:47:03,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76352484 - End of configuration. [testng] [2024-11-01 00:47:03,494] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32.pct: [testng] 00:47:03,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:47:03,494 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:03,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-01_00-47-03.log] [testng] 00:47:03,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36c16470 - End of configuration. [testng] [2024-11-01 00:47:03,539] [pool-1-thread-4] Initializing /data/misc/swlogo.pict: [testng] 00:47:03,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:47:03,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:03,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-01_00-47-03.log] [testng] 00:47:03,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3166f7d4 - End of configuration. [testng] [2024-11-01 00:47:03,582] [pool-1-thread-3] Initializing /data/jqd/32bit.pict: [testng] 00:47:03,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:47:03,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:03,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-01_00-47-03.log] [testng] 00:47:03,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2da0b9ac - End of configuration. [testng] [2024-11-01 00:47:03,632] [pool-1-thread-2] Initializing /data/wayne/PotatoMeristem.pict: [testng] 00:47:03,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:47:03,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:47:03,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-01_00-47-03.log] [testng] 00:47:03,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ea13ad - End of configuration. [testng] [2024-11-01 00:47:05,472] [pool-1-thread-8] Initializing /data/brian/images/BLK.PCT: [testng] [2024-11-01 00:47:05,535] [pool-1-thread-9] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-11-01 00:47:05,595] [pool-1-thread-12] Initializing /data/jqd/sixteenBit.pict: [testng] [2024-11-01 00:47:05,644] [pool-1-thread-4] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-11-01 00:47:05,693] [pool-1-thread-6] Initializing /data/brian/images/WHT.PCT: [testng] [2024-11-01 00:47:05,762] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2024-11-01 00:47:05,957] [pool-1-thread-5] Initializing /data/brian/images/YEL.PCT: [testng] [2024-11-01 00:47:06,014] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-11-01 00:47:06,139] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-11-01 00:47:06,448] [pool-1-thread-3] Initializing /data/misc/planet.pict: [testng] [2024-11-01 00:47:06,564] [pool-1-thread-2] Initializing /data/brian/images/BLU.PCT: [testng] [2024-11-01 00:47:06,626] [pool-1-thread-1] Initializing /data/jqd/mireSixteen.pict: [testng] [2024-11-01 00:47:07,420] [pool-1-thread-4] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS