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Started by upstream project "BIOFORMATS-test-repo" build number 241 originally caused by: Started by upstream project "Trigger" build number 266 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins2614246710526277198.sh + '[' ultraview = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_37931_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:02:24,501 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:02:24,502 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 02:02:24,502 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:02:24,503 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:02:24,504 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:02:24,504 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:02:24,504 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:02:24,504 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:02:24,505 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:02:24,505 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:02:24,505 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:02:24,505 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:02:24,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:02:24,726 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:02:24,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:02:24,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:02:24,761 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:02:24,761 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:02:24,762 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:02:24,762 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:02:24,762 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 02:02:24,763 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 02:02:24,763 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 258 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-01 02:02:24,773] [main] java.version = 1.8.0_342 [testng] 02:02:24,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:02:24,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:24,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-01_02-02-24.log] [testng] 02:02:24,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-01 02:02:24,825] [main] testng.directory = /data [testng] [2024-11-01 02:02:24,825] [main] testng.configDirectory = /config [testng] [2024-11-01 02:02:24,837] [main] testng.multiplier = 1.0 [testng] [2024-11-01 02:02:24,837] [main] testng.in-memory = false [testng] [2024-11-01 02:02:24,837] [main] testng.allow-missing = false [testng] [2024-11-01 02:02:24,837] [main] user.language = en [testng] [2024-11-01 02:02:24,837] [main] user.country = ${user.country} [testng] [2024-11-01 02:02:24,837] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-01 02:02:45,241] [main] ---------------------------------------- [testng] [2024-11-01 02:02:45,242] [main] Total files: 19 [testng] [2024-11-01 02:02:45,242] [main] Scan time: 20.403 s (1073 ms/file) [testng] [2024-11-01 02:02:45,242] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-01 02:03:01,579] [pool-1-thread-1] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm: [testng] 02:03:01,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:03:01,579 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:01,580 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-01_02-03-01.log] [testng] 02:03:01,580 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ae2b45e - End of configuration. [testng] [2024-11-01 02:03:02,241] [pool-1-thread-12] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm: [testng] 02:03:02,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:03:02,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:02,242 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-01_02-03-02.log] [testng] 02:03:02,243 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5aeab124 - End of configuration. [testng] [2024-11-01 02:03:02,988] [pool-1-thread-11] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM: [testng] 02:03:02,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:03:02,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:02,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-01_02-03-02.log] [testng] 02:03:02,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e01fb27 - End of configuration. [testng] [2024-11-01 02:03:03,785] [pool-1-thread-10] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm: [testng] 02:03:03,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:03:03,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:03,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-01_02-03-03.log] [testng] 02:03:03,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b9a3d3c - End of configuration. [testng] [2024-11-01 02:03:04,513] [pool-1-thread-9] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM: [testng] 02:03:04,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:03:04,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:04,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-01_02-03-04.log] [testng] 02:03:04,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40a8c3c0 - End of configuration. [testng] [2024-11-01 02:03:05,271] [pool-1-thread-8] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm: [testng] 02:03:05,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:03:05,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:05,273 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-01_02-03-05.log] [testng] 02:03:05,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@340a1b05 - End of configuration. [testng] [2024-11-01 02:03:05,996] [pool-1-thread-7] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm: [testng] 02:03:05,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:03:05,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:05,996 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-01_02-03-05.log] [testng] 02:03:05,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3983179c - End of configuration. [testng] [2024-11-01 02:03:06,796] [pool-1-thread-6] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM: [testng] 02:03:06,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:03:06,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:06,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-01_02-03-06.log] [testng] 02:03:06,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d0a6af8 - End of configuration. [testng] [2024-11-01 02:03:07,621] [pool-1-thread-5] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM: [testng] 02:03:07,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:03:07,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:07,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-01_02-03-07.log] [testng] 02:03:07,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62d31047 - End of configuration. [testng] [2024-11-01 02:03:08,512] [pool-1-thread-4] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM: [testng] 02:03:08,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:03:08,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:08,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-01_02-03-08.log] [testng] 02:03:08,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@656a21b5 - End of configuration. [testng] [2024-11-01 02:03:09,319] [pool-1-thread-3] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm: [testng] 02:03:09,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:03:09,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:09,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-01_02-03-09.log] [testng] 02:03:09,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@607caa95 - End of configuration. [testng] [2024-11-01 02:03:10,139] [pool-1-thread-2] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm: [testng] 02:03:10,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:03:10,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:03:10,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-01_02-03-10.log] [testng] 02:03:10,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47624c2c - End of configuration. [testng] [2024-11-01 02:03:37,038] [pool-1-thread-5] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM: [testng] [2024-11-01 02:03:50,421] [pool-1-thread-8] Initializing /data/chad/DIC/EZRA200820080626102637.HTM: [testng] [2024-11-01 02:03:55,060] [pool-1-thread-1] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm: [testng] [2024-11-01 02:04:05,688] [pool-1-thread-5] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM: [testng] [2024-11-01 02:04:10,207] [pool-1-thread-3] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM: [testng] [2024-11-01 02:04:16,058] [pool-1-thread-8] Initializing /data/todd/movement-1.htm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 22 minutes 23 seconds Finished: SUCCESS