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Started by upstream project "BIOFORMATS-test-repo" build number 242 originally caused by: Started by upstream project "Trigger" build number 267 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins9938979118944020639.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_38046_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:43:56,226 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:43:56,228 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 00:43:56,228 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:43:56,229 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:43:56,230 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:43:56,230 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:43:56,231 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:43:56,231 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:43:56,231 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:43:56,232 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:43:56,232 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:43:56,233 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:43:56,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:43:56,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:43:56,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:43:56,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:43:56,432 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:43:56,433 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:43:56,433 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:43:56,433 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:43:56,433 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 00:43:56,434 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 00:43:56,434 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 203 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-02 00:43:56,443] [main] java.version = 11.0.16 [testng] 00:43:56,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:43:56,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:43:56,490 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-02_00-43-56.log] [testng] 00:43:56,492 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-02 00:43:56,494] [main] testng.directory = /data [testng] [2024-11-02 00:43:56,494] [main] testng.configDirectory = /config [testng] [2024-11-02 00:43:56,507] [main] testng.multiplier = 1.0 [testng] [2024-11-02 00:43:56,509] [main] testng.in-memory = false [testng] [2024-11-02 00:43:56,509] [main] testng.allow-missing = false [testng] [2024-11-02 00:43:56,509] [main] user.language = en [testng] [2024-11-02 00:43:56,509] [main] user.country = ${user.country} [testng] [2024-11-02 00:43:56,509] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-02 00:44:14,234] [main] ---------------------------------------- [testng] [2024-11-02 00:44:14,234] [main] Total files: 259 [testng] [2024-11-02 00:44:14,234] [main] Scan time: 17.725 s (68 ms/file) [testng] [2024-11-02 00:44:14,234] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-02 00:51:10,344] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7.oib: [testng] 00:51:10,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:51:10,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:10,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-02_00-51-10.log] [testng] 00:51:10,347 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8139a86 - End of configuration. [testng] [2024-11-02 00:51:10,605] [pool-1-thread-12] Initializing /data/aryeh/030408 2 1.oib: [testng] 00:51:10,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:51:10,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:10,607 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-02_00-51-10.log] [testng] 00:51:10,607 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a78ea21 - End of configuration. [testng] [2024-11-02 00:51:10,861] [pool-1-thread-11] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] 00:51:10,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:51:10,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:10,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-02_00-51-10.log] [testng] 00:51:10,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45e4599f - End of configuration. [testng] [2024-11-02 00:51:11,262] [pool-1-thread-10] Initializing /data/marc/V0606J.oib: [testng] 00:51:11,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:51:11,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:11,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-02_00-51-11.log] [testng] 00:51:11,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bcd599f - End of configuration. [testng] [2024-11-02 00:51:12,799] [pool-1-thread-9] Initializing /data/johannes/step4.bmp: [testng] 00:51:12,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:51:12,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:12,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-02_00-51-12.log] [testng] 00:51:12,801 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76373bf2 - End of configuration. [testng] [2024-11-02 00:51:12,858] [pool-1-thread-8] Initializing /data/karl/Image0009.oib: [testng] 00:51:12,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:51:12,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:12,859 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-02_00-51-12.log] [testng] 00:51:12,859 |-INFO in ch.qos.logback.core.sift.SiftProcessor@555e4700 - End of configuration. [testng] [2024-11-02 00:51:13,003] [pool-1-thread-7] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] 00:51:13,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:51:13,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:13,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-02_00-51-13.log] [testng] 00:51:13,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24ea24a2 - End of configuration. [testng] [2024-11-02 00:51:13,430] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] 00:51:13,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:51:13,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:13,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-02_00-51-13.log] [testng] 00:51:13,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60658ab2 - End of configuration. [testng] [2024-11-02 00:51:13,876] [pool-1-thread-5] Initializing /data/molly/11OCT2.OIF: [testng] 00:51:13,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:51:13,876 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:13,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-02_00-51-13.log] [testng] 00:51:13,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76462e98 - End of configuration. [testng] [2024-11-02 00:51:20,002] [pool-1-thread-4] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] 00:51:20,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:51:20,002 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:20,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-02_00-51-20.log] [testng] 00:51:20,003 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58a09946 - End of configuration. [testng] [2024-11-02 00:51:20,210] [pool-1-thread-3] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] 00:51:20,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:51:20,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:20,210 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-02_00-51-20.log] [testng] 00:51:20,211 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21a3ed49 - End of configuration. [testng] [2024-11-02 00:51:20,431] [pool-1-thread-2] Initializing /data/brian/Lambda10nm.oib: [testng] 00:51:20,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:51:20,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:51:20,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-02_00-51-20.log] [testng] 00:51:20,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e4f7f62 - End of configuration. [testng] [2024-11-02 00:51:23,584] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-11-02 00:51:23,870] [pool-1-thread-8] Initializing /data/molly/11OCT4.OIF: [testng] [2024-11-02 00:51:27,714] [pool-1-thread-2] Initializing /data/glen/simulstack.oif: [testng] [2024-11-02 00:51:28,726] [pool-1-thread-1] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-02 00:51:29,036] [pool-1-thread-12] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-02 00:51:29,381] [pool-1-thread-3] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-02 00:51:29,564] [pool-1-thread-6] Initializing /data/glen/simulstack.oib: [testng] [2024-11-02 00:51:29,882] [pool-1-thread-7] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-02 00:51:30,566] [pool-1-thread-11] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-02 00:51:32,498] [pool-1-thread-3] Initializing /data/david/Image0016.oif: [testng] [2024-11-02 00:51:33,334] [pool-1-thread-9] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-02 00:51:38,357] [pool-1-thread-6] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-02 00:51:40,895] [pool-1-thread-1] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-11-02 00:51:41,491] [pool-1-thread-12] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-02 00:51:41,824] [pool-1-thread-11] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-02 00:51:42,140] [pool-1-thread-7] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-02 00:51:43,230] [pool-1-thread-10] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-02 00:51:44,286] [pool-1-thread-4] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-02 00:51:45,556] [pool-1-thread-11] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-02 00:51:45,676] [pool-1-thread-12] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-11-02 00:51:46,651] [pool-1-thread-7] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-02 00:51:56,241] [pool-1-thread-1] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-02 00:52:09,096] [pool-1-thread-11] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-02 00:52:10,019] [pool-1-thread-10] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-02 00:52:11,011] [pool-1-thread-4] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-02 00:52:11,910] [pool-1-thread-6] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-02 00:52:15,441] [pool-1-thread-10] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-11-02 00:52:18,472] [pool-1-thread-4] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-02 00:53:00,948] [pool-1-thread-10] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-02 00:53:11,119] [pool-1-thread-3] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-02 00:54:07,344] [pool-1-thread-11] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-02 00:54:08,627] [pool-1-thread-6] Initializing /data/allan/62909#1.oib: [testng] [2024-11-02 00:54:09,116] [pool-1-thread-12] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-02 00:54:15,114] [pool-1-thread-6] Initializing /data/molly/11OCT5.OIF: [testng] [2024-11-02 00:54:30,180] [pool-1-thread-11] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-02 00:54:34,402] [pool-1-thread-11] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-11-02 00:56:48,006] [pool-1-thread-3] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-02 00:56:51,713] [pool-1-thread-3] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-02 00:57:46,640] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-02 00:57:53,410] [pool-1-thread-3] Initializing /data/jae/Image0001.oib: [testng] [2024-11-02 00:57:59,973] [pool-1-thread-3] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-02 00:58:39,549] [pool-1-thread-3] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-02 00:58:45,284] [pool-1-thread-3] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-02 00:59:29,100] [pool-1-thread-3] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-02 00:59:33,549] [pool-1-thread-3] Initializing /data/michael/CELL3.oib: [testng] [2024-11-02 00:59:37,403] [pool-1-thread-3] Initializing /data/simon/never_worked.oib: [testng] [2024-11-02 00:59:41,793] [pool-1-thread-3] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-02 01:00:04,669] [pool-1-thread-3] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-02 01:00:11,808] [pool-1-thread-3] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-02 01:00:16,322] [pool-1-thread-3] Initializing /data/johannes/step1.bmp: [testng] [2024-11-02 01:00:18,537] [pool-1-thread-3] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-02 01:00:23,102] [pool-1-thread-3] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-02 01:00:27,115] [pool-1-thread-3] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-02 01:00:46,510] [pool-1-thread-3] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-02 01:00:51,190] [pool-1-thread-3] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-11-02 01:03:04,798] [pool-1-thread-2] Initializing /data/glen/111407.oif: [testng] [2024-11-02 01:06:31,996] [pool-1-thread-8] Initializing /data/brian/FLIP.oib: [testng] [2024-11-02 01:06:38,425] [pool-1-thread-8] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-02 01:06:44,604] [pool-1-thread-8] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-02 01:06:49,115] [pool-1-thread-8] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-02 01:06:54,195] [pool-1-thread-8] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-02 01:06:55,267] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-02 01:07:01,268] [pool-1-thread-12] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-02 01:07:30,188] [pool-1-thread-8] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-02 01:07:34,451] [pool-1-thread-8] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-02 01:07:38,663] [pool-1-thread-8] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-02 01:08:35,172] [pool-1-thread-3] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-02 01:08:37,625] [pool-1-thread-3] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-02 01:08:49,428] [pool-1-thread-10] Initializing /data/christian/20min.oif: [testng] [2024-11-02 01:09:00,261] [pool-1-thread-10] Initializing /data/marc/V0606L.oib: [testng] [2024-11-02 01:09:02,120] [pool-1-thread-3] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-02 01:09:14,499] [pool-1-thread-10] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-11-02 01:09:52,429] [pool-1-thread-10] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-02 01:09:56,071] [pool-1-thread-10] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-02 01:10:01,279] [pool-1-thread-10] Initializing /data/aryeh/1h.oib: [testng] [2024-11-02 01:10:09,869] [pool-1-thread-10] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-11-02 01:10:16,368] [pool-1-thread-10] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-02 01:11:08,876] [pool-1-thread-6] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-02 01:11:09,874] [pool-1-thread-9] Initializing /data/david/Image0016.oib: [testng] [2024-11-02 01:11:11,104] [pool-1-thread-6] Initializing /data/monica/Image0056.oif: [testng] [2024-11-02 01:11:14,561] [pool-1-thread-9] Initializing /data/glen/Image0002.oif: [testng] [2024-11-02 01:11:57,948] [pool-1-thread-6] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-02 01:12:04,187] [pool-1-thread-6] Initializing /data/yasunori/series_1.oib: [testng] [2024-11-02 01:12:11,564] [pool-1-thread-6] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-02 01:12:35,862] [pool-1-thread-6] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-11-02 01:12:44,526] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-02 01:12:51,322] [pool-1-thread-6] Initializing /data/johannes/step3.bmp: [testng] [2024-11-02 01:12:53,989] [pool-1-thread-6] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-11-02 01:16:52,019] [pool-1-thread-7] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-02 01:17:00,022] [pool-1-thread-7] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-02 01:17:07,307] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-02 01:17:15,475] [pool-1-thread-7] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-02 01:17:21,964] [pool-1-thread-7] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-02 01:17:27,240] [pool-1-thread-2] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-02 01:17:38,082] [pool-1-thread-7] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-11-02 01:18:22,269] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-02 01:18:30,375] [pool-1-thread-6] Initializing /data/glen/seqlinestack.oif: [testng] [2024-11-02 01:20:01,079] [pool-1-thread-3] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-02 01:20:06,782] [pool-1-thread-3] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-02 01:20:12,316] [pool-1-thread-3] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-02 01:20:18,110] [pool-1-thread-3] Initializing /data/pedro/plv-test.oib: [testng] [2024-11-02 01:20:23,201] [pool-1-thread-3] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-02 01:24:55,498] [pool-1-thread-10] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-02 01:27:09,104] [pool-1-thread-5] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-02 01:27:14,745] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-02 01:27:19,623] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-02 01:27:24,799] [pool-1-thread-5] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-11-02 01:27:34,185] [pool-1-thread-5] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-02 01:27:39,661] [pool-1-thread-5] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-02 01:27:46,883] [pool-1-thread-5] Initializing /data/sten/01.oib: [testng] [2024-11-02 01:27:52,918] [pool-1-thread-5] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-02 01:27:59,633] [pool-1-thread-5] Initializing /data/johannes/step2.bmp: [testng] [2024-11-02 01:28:02,182] [pool-1-thread-5] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-11-02 01:30:48,036] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-02 01:30:54,463] [pool-1-thread-1] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-11-02 01:30:59,059] [pool-1-thread-1] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-11-02 01:31:33,830] [pool-1-thread-12] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-02 01:31:34,721] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-11-02 01:31:39,891] [pool-1-thread-12] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-02 01:31:41,142] [pool-1-thread-1] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-11-02 01:31:44,413] [pool-1-thread-12] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-02 01:31:46,305] [pool-1-thread-1] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-02 01:31:49,882] [pool-1-thread-12] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-02 01:32:16,333] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-02 01:32:22,815] [pool-1-thread-9] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-02 01:32:53,188] [pool-1-thread-1] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-02 01:32:54,465] [pool-1-thread-12] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-02 01:33:01,595] [pool-1-thread-1] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-02 01:33:06,774] [pool-1-thread-12] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-02 01:33:13,227] [pool-1-thread-12] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-02 01:33:15,132] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-02 01:33:22,422] [pool-1-thread-12] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 02:04:02,145 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:04:02,146 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:02,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-02_02-04-02.log] [testng] 02:04:02,148 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76feaf03 - End of configuration. [testng] 02:48:38,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:48:38,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:38,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-02_02-48-38.log] [testng] 02:48:38,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f116270 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 124 minutes 48 seconds Finished: SUCCESS