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Started by upstream project "BIOFORMATS-test-repo" build number 243 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins14308082015538017612.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_38210_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 14:13:36,708 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 14:13:36,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - No custom configurators were discovered as a service. [testng] 14:13:36,710 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 14:13:36,711 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 14:13:36,711 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 14:13:36,712 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 14:13:36,712 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 14:13:36,712 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 14:13:36,713 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 14:13:36,713 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 14:13:36,714 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 14:13:36,714 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 14:13:36,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 14:13:36,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 14:13:36,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 14:13:36,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 14:13:36,949 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 14:13:36,949 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 14:13:36,949 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 14:13:36,950 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 14:13:36,950 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@45099dd3 - End of configuration. [testng] 14:13:36,951 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@60099951 - Registering current configuration as safe fallback point [testng] 14:13:36,951 |-INFO in ch.qos.logback.classic.util.ContextInitializer@65f095f8 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 238 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-02 14:13:36,966] [main] java.version = 11.0.16 [testng] 14:13:36,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 14:13:36,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:13:37,020 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-02_14-13-36.log] [testng] 14:13:37,022 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21be3395 - End of configuration. [testng] [2024-11-02 14:13:37,025] [main] testng.directory = /data [testng] [2024-11-02 14:13:37,025] [main] testng.configDirectory = /config [testng] [2024-11-02 14:13:37,036] [main] testng.multiplier = 1.0 [testng] [2024-11-02 14:13:37,038] [main] testng.in-memory = false [testng] [2024-11-02 14:13:37,038] [main] testng.allow-missing = false [testng] [2024-11-02 14:13:37,038] [main] user.language = en [testng] [2024-11-02 14:13:37,038] [main] user.country = ${user.country} [testng] [2024-11-02 14:13:37,038] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-02 14:14:15,524] [main] ---------------------------------------- [testng] [2024-11-02 14:14:15,524] [main] Total files: 259 [testng] [2024-11-02 14:14:15,525] [main] Scan time: 38.486 s (148 ms/file) [testng] [2024-11-02 14:14:15,525] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-02 14:22:32,530] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7.oib: [testng] 14:22:32,531 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 14:22:32,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:22:32,534 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-02_14-22-32.log] [testng] 14:22:32,534 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76010528 - End of configuration. [testng] [2024-11-02 14:22:32,927] [pool-1-thread-12] Initializing /data/aryeh/030408 2 1.oib: [testng] 14:22:32,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 14:22:32,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:22:32,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-02_14-22-32.log] [testng] 14:22:32,929 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9797dbd - End of configuration. [testng] [2024-11-02 14:22:33,342] [pool-1-thread-11] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] 14:22:33,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 14:22:33,343 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:22:33,344 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-02_14-22-33.log] [testng] 14:22:33,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36dc19ae - End of configuration. [testng] [2024-11-02 14:22:33,869] [pool-1-thread-10] Initializing /data/marc/V0606J.oib: [testng] 14:22:33,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 14:22:33,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:22:33,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-02_14-22-33.log] [testng] 14:22:33,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45422a20 - End of configuration. [testng] [2024-11-02 14:22:35,673] [pool-1-thread-9] Initializing /data/johannes/step4.bmp: [testng] 14:22:35,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 14:22:35,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:22:35,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-02_14-22-35.log] [testng] 14:22:35,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fc5a249 - End of configuration. [testng] [2024-11-02 14:22:35,715] [pool-1-thread-8] Initializing /data/karl/Image0009.oib: [testng] 14:22:35,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 14:22:35,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:22:35,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-02_14-22-35.log] [testng] 14:22:35,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22b399a7 - End of configuration. [testng] [2024-11-02 14:22:35,873] [pool-1-thread-7] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] 14:22:35,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 14:22:35,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:22:35,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-02_14-22-35.log] [testng] 14:22:35,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f4cbd34 - End of configuration. [testng] [2024-11-02 14:22:36,289] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] 14:22:36,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 14:22:36,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:22:36,290 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-02_14-22-36.log] [testng] 14:22:36,290 |-INFO in ch.qos.logback.core.sift.SiftProcessor@92b9339 - End of configuration. [testng] [2024-11-02 14:22:36,696] [pool-1-thread-5] Initializing /data/molly/11OCT2.OIF: [testng] 14:22:36,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 14:22:36,697 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:22:36,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-02_14-22-36.log] [testng] 14:22:36,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bc91fe9 - End of configuration. [testng] [2024-11-02 14:22:46,573] [pool-1-thread-4] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] 14:22:46,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 14:22:46,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:22:46,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-02_14-22-46.log] [testng] 14:22:46,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f8d2c84 - End of configuration. [testng] [2024-11-02 14:22:46,780] [pool-1-thread-3] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] 14:22:46,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 14:22:46,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:22:46,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-02_14-22-46.log] [testng] 14:22:46,781 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69768f4b - End of configuration. [testng] [2024-11-02 14:22:47,306] [pool-1-thread-2] Initializing /data/brian/Lambda10nm.oib: [testng] 14:22:47,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 14:22:47,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:22:47,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-02_14-22-47.log] [testng] 14:22:47,307 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2348f9e2 - End of configuration. [testng] [2024-11-02 14:22:50,542] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-11-02 14:22:51,019] [pool-1-thread-8] Initializing /data/glen/simulstack.oif: [testng] [2024-11-02 14:22:52,322] [pool-1-thread-2] Initializing /data/molly/11OCT4.OIF: [testng] [2024-11-02 14:22:57,413] [pool-1-thread-1] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-02 14:22:57,801] [pool-1-thread-12] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-02 14:22:57,976] [pool-1-thread-3] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-02 14:22:59,579] [pool-1-thread-6] Initializing /data/glen/simulstack.oib: [testng] [2024-11-02 14:23:00,118] [pool-1-thread-7] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-02 14:23:00,875] [pool-1-thread-11] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-02 14:23:02,363] [pool-1-thread-9] Initializing /data/david/Image0016.oif: [testng] [2024-11-02 14:23:03,553] [pool-1-thread-12] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-02 14:23:07,258] [pool-1-thread-1] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-02 14:23:09,227] [pool-1-thread-3] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-11-02 14:23:10,117] [pool-1-thread-6] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-02 14:23:10,429] [pool-1-thread-11] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-02 14:23:10,764] [pool-1-thread-4] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-02 14:23:11,584] [pool-1-thread-7] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-02 14:23:13,039] [pool-1-thread-10] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-02 14:23:14,146] [pool-1-thread-6] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-02 14:23:14,414] [pool-1-thread-11] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-11-02 14:23:15,630] [pool-1-thread-4] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-02 14:23:24,695] [pool-1-thread-3] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-02 14:23:36,447] [pool-1-thread-6] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-02 14:23:37,250] [pool-1-thread-7] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-02 14:23:39,218] [pool-1-thread-1] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-02 14:23:40,258] [pool-1-thread-10] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-02 14:23:42,161] [pool-1-thread-7] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-11-02 14:23:45,159] [pool-1-thread-7] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-02 14:24:24,589] [pool-1-thread-1] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-02 14:24:37,192] [pool-1-thread-9] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-02 14:25:25,272] [pool-1-thread-11] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-02 14:25:32,971] [pool-1-thread-11] Initializing /data/allan/62909#1.oib: [testng] [2024-11-02 14:25:33,426] [pool-1-thread-6] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-02 14:25:35,596] [pool-1-thread-10] Initializing /data/molly/11OCT5.OIF: [testng] [2024-11-02 14:25:46,083] [pool-1-thread-11] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-02 14:25:49,375] [pool-1-thread-11] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-11-02 14:27:25,773] [pool-1-thread-9] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-02 14:27:28,345] [pool-1-thread-9] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-02 14:27:59,207] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-02 14:28:04,181] [pool-1-thread-9] Initializing /data/jae/Image0001.oib: [testng] [2024-11-02 14:28:10,045] [pool-1-thread-9] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-02 14:28:33,756] [pool-1-thread-9] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-02 14:28:40,570] [pool-1-thread-9] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-02 14:29:28,028] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-02 14:29:32,862] [pool-1-thread-9] Initializing /data/michael/CELL3.oib: [testng] [2024-11-02 14:29:39,119] [pool-1-thread-9] Initializing /data/simon/never_worked.oib: [testng] [2024-11-02 14:29:44,404] [pool-1-thread-9] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-02 14:30:12,746] [pool-1-thread-9] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-02 14:30:17,681] [pool-1-thread-9] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-02 14:30:22,759] [pool-1-thread-9] Initializing /data/johannes/step1.bmp: [testng] [2024-11-02 14:30:24,899] [pool-1-thread-9] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-02 14:30:30,228] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-02 14:30:34,528] [pool-1-thread-9] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-02 14:30:51,089] [pool-1-thread-9] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-02 14:30:55,872] [pool-1-thread-9] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-11-02 14:32:35,696] [pool-1-thread-8] Initializing /data/glen/111407.oif: [testng] [2024-11-02 14:35:12,988] [pool-1-thread-2] Initializing /data/brian/FLIP.oib: [testng] [2024-11-02 14:35:18,857] [pool-1-thread-2] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-02 14:35:26,074] [pool-1-thread-2] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-02 14:35:30,187] [pool-1-thread-2] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-02 14:35:34,326] [pool-1-thread-2] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-02 14:35:50,102] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-02 14:35:57,061] [pool-1-thread-6] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-02 14:36:13,649] [pool-1-thread-2] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-02 14:36:19,301] [pool-1-thread-2] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-02 14:36:25,308] [pool-1-thread-2] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-02 14:37:59,371] [pool-1-thread-1] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-02 14:38:04,015] [pool-1-thread-1] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-02 14:38:20,296] [pool-1-thread-9] Initializing /data/christian/20min.oif: [testng] [2024-11-02 14:38:40,280] [pool-1-thread-1] Initializing /data/marc/V0606L.oib: [testng] [2024-11-02 14:38:56,820] [pool-1-thread-9] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-02 14:39:05,898] [pool-1-thread-1] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-11-02 14:39:34,448] [pool-1-thread-1] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-02 14:39:36,592] [pool-1-thread-1] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-02 14:39:40,150] [pool-1-thread-1] Initializing /data/aryeh/1h.oib: [testng] [2024-11-02 14:39:48,281] [pool-1-thread-1] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-11-02 14:39:53,596] [pool-1-thread-1] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-02 14:40:09,321] [pool-1-thread-12] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-02 14:40:10,586] [pool-1-thread-12] Initializing /data/david/Image0016.oib: [testng] [2024-11-02 14:40:13,069] [pool-1-thread-10] Initializing /data/monica/Image0056.oif: [testng] [2024-11-02 14:40:14,902] [pool-1-thread-12] Initializing /data/glen/Image0002.oif: [testng] [2024-11-02 14:40:45,146] [pool-1-thread-10] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-02 14:40:49,362] [pool-1-thread-10] Initializing /data/yasunori/series_1.oib: [testng] [2024-11-02 14:40:53,527] [pool-1-thread-10] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-02 14:41:20,602] [pool-1-thread-10] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-11-02 14:41:24,562] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-02 14:41:29,608] [pool-1-thread-10] Initializing /data/johannes/step3.bmp: [testng] [2024-11-02 14:41:31,405] [pool-1-thread-10] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-11-02 14:42:52,935] [pool-1-thread-4] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-02 14:42:58,635] [pool-1-thread-4] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-02 14:43:03,856] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-02 14:43:06,576] [pool-1-thread-8] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-02 14:43:08,857] [pool-1-thread-4] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-02 14:43:10,099] [pool-1-thread-8] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-02 14:43:15,915] [pool-1-thread-4] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-11-02 14:43:56,894] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-02 14:44:03,479] [pool-1-thread-10] Initializing /data/glen/seqlinestack.oif: [testng] [2024-11-02 14:44:41,145] [pool-1-thread-9] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-02 14:44:45,543] [pool-1-thread-9] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-02 14:44:49,370] [pool-1-thread-9] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-02 14:44:54,255] [pool-1-thread-9] Initializing /data/pedro/plv-test.oib: [testng] [2024-11-02 14:44:58,812] [pool-1-thread-9] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-02 14:47:35,435] [pool-1-thread-1] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-02 14:49:00,348] [pool-1-thread-5] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-02 14:49:06,884] [pool-1-thread-5] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-02 14:49:12,044] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-02 14:49:18,851] [pool-1-thread-5] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-11-02 14:49:33,574] [pool-1-thread-5] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-02 14:49:40,449] [pool-1-thread-5] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-02 14:49:47,855] [pool-1-thread-5] Initializing /data/sten/01.oib: [testng] [2024-11-02 14:49:53,724] [pool-1-thread-5] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-02 14:50:01,347] [pool-1-thread-5] Initializing /data/johannes/step2.bmp: [testng] [2024-11-02 14:50:04,490] [pool-1-thread-5] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-11-02 14:53:33,741] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-02 14:53:45,208] [pool-1-thread-3] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-11-02 14:53:53,049] [pool-1-thread-3] Initializing /data/glen/Null file/test no change.oif: [testng] [2024-11-02 14:54:44,330] [pool-1-thread-3] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-02 14:54:51,937] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-11-02 14:55:01,949] [pool-1-thread-3] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-02 14:55:09,569] [pool-1-thread-3] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-11-02 14:55:20,085] [pool-1-thread-3] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-02 14:55:28,884] [pool-1-thread-3] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-02 14:56:06,151] [pool-1-thread-6] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-02 14:57:00,110] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-02 14:57:04,596] [pool-1-thread-3] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-02 14:57:39,624] [pool-1-thread-12] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-02 14:57:49,901] [pool-1-thread-12] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-02 14:58:01,267] [pool-1-thread-12] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-02 14:58:23,399] [pool-1-thread-6] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-02 14:58:33,634] [pool-1-thread-6] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-02 14:58:37,234] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-02 14:58:49,582] [pool-1-thread-6] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] 16:12:23,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 16:12:23,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:12:23,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-02_16-12-23.log] [testng] 16:12:23,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dea0730 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 118 minutes 50 seconds Finished: SUCCESS