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Started by upstream project "BIOFORMATS-test-repo" build number 3 originally caused by: Started by upstream project "Trigger" build number 4 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins10098844351401473650.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_383_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:09:36,080 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:09:36,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:09:36,082 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:09:36,084 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:09:36,084 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:09:36,085 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:09:36,085 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:09:36,086 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:09:36,086 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:09:36,087 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:09:36,088 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:09:36,088 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:09:36,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:09:36,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:09:36,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:09:36,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:09:36,307 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:09:36,307 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:09:36,307 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:09:36,308 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:09:36,308 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:09:36,309 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:09:36,309 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 223 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-16 01:09:36,320] [main] java.version = 11.0.16 [testng] 01:09:36,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:09:36,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:09:36,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-16_01-09-36.log] [testng] 01:09:36,374 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-03-16 01:09:36,377] [main] testng.directory = /data [testng] [2024-03-16 01:09:36,378] [main] testng.configDirectory = /config [testng] [2024-03-16 01:09:36,392] [main] testng.multiplier = 1.0 [testng] [2024-03-16 01:09:36,394] [main] testng.in-memory = false [testng] [2024-03-16 01:09:36,394] [main] testng.allow-missing = false [testng] [2024-03-16 01:09:36,394] [main] user.language = en [testng] [2024-03-16 01:09:36,394] [main] user.country = ${user.country} [testng] [2024-03-16 01:09:36,395] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-16 01:17:34,038] [main] ---------------------------------------- [testng] [2024-03-16 01:17:34,038] [main] Total files: 7329 [testng] [2024-03-16 01:17:34,039] [main] Scan time: 477.643 s (65 ms/file) [testng] [2024-03-16 01:17:34,039] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-16 01:21:15,379] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 01:21:15,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:21:15,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:15,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-16_01-21-15.log] [testng] 01:21:15,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b436a96 - End of configuration. [testng] [2024-03-16 01:21:15,512] [pool-1-thread-1] Used files list does not include base file [testng] [2024-03-16 01:21:15,517] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] 01:21:15,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:21:15,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:15,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-16_01-21-15.log] [testng] 01:21:15,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65cfe02a - End of configuration. [testng] [2024-03-16 01:21:16,773] [pool-1-thread-11] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] 01:21:16,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:21:16,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:16,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-16_01-21-16.log] [testng] 01:21:16,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6077b677 - End of configuration. [testng] [2024-03-16 01:21:16,954] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 01:21:16,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:21:16,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:16,955 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-16_01-21-16.log] [testng] 01:21:16,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d1d69b - End of configuration. [testng] [2024-03-16 01:21:17,121] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] 01:21:17,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:21:17,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:17,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-16_01-21-17.log] [testng] 01:21:17,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@629c3590 - End of configuration. [testng] [2024-03-16 01:21:17,395] [pool-1-thread-9] Used files list does not include base file [testng] [2024-03-16 01:21:17,397] [pool-1-thread-8] Initializing /data/dave/Z Series.stk: [testng] 01:21:17,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:21:17,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:17,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-16_01-21-17.log] [testng] 01:21:17,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27c5596e - End of configuration. [testng] [2024-03-16 01:21:17,523] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] 01:21:17,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:21:17,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:17,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-16_01-21-17.log] [testng] 01:21:17,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@394ea914 - End of configuration. [testng] [2024-03-16 01:21:17,582] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 01:21:17,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:21:17,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:17,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-16_01-21-17.log] [testng] 01:21:17,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d6eb2e3 - End of configuration. [testng] [2024-03-16 01:21:17,861] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 01:21:17,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:21:17,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:17,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-16_01-21-17.log] [testng] 01:21:17,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@598e8eed - End of configuration. [testng] [2024-03-16 01:21:18,013] [pool-1-thread-5] Used files list does not include base file [testng] [2024-03-16 01:21:18,015] [pool-1-thread-4] Initializing /data/qa-31304/Well _C6_1.tif: [testng] 01:21:18,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:21:18,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:18,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-16_01-21-18.log] [testng] 01:21:18,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13b8af7b - End of configuration. [testng] [2024-03-16 01:21:18,185] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] 01:21:18,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:21:18,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:18,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-16_01-21-18.log] [testng] 01:21:18,187 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1792312c - End of configuration. [testng] [2024-03-16 01:21:18,283] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] 01:21:18,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:21:18,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:21:18,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-16_01-21-18.log] [testng] 01:21:18,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a669b40 - End of configuration. [testng] [2024-03-16 01:21:21,764] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-03-16 01:21:21,946] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-03-16 01:21:22,123] [pool-1-thread-11] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-03-16 01:21:22,300] [pool-1-thread-3] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-03-16 01:21:22,469] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-03-16 01:21:22,732] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-16 01:21:24,667] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-03-16 01:21:25,088] [pool-1-thread-6] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-03-16 01:21:25,424] [pool-1-thread-10] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-03-16 01:21:25,650] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-03-16 01:21:26,928] [pool-1-thread-7] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-03-16 01:21:27,189] [pool-1-thread-8] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-03-16 01:21:27,441] [pool-1-thread-11] Initializing /data/samples/zseries.stk: [testng] [2024-03-16 01:21:27,992] [pool-1-thread-10] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-03-16 01:21:28,682] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-16 01:21:28,852] [pool-1-thread-6] Used files list does not include base file [testng] [2024-03-16 01:21:29,068] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-03-16 01:21:29,312] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-16 01:21:29,943] [pool-1-thread-3] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-03-16 01:21:31,591] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-03-16 01:21:31,725] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-03-16 01:21:32,103] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-03-16 01:21:32,871] [pool-1-thread-6] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-03-16 01:21:32,966] [pool-1-thread-7] Initializing /data/steve/Experiment2.stk: [testng] [2024-03-16 01:21:33,817] [pool-1-thread-9] Initializing /data/josh/2101to600f.stk: [testng] [2024-03-16 01:21:36,526] [pool-1-thread-1] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-03-16 01:21:36,638] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-03-16 01:21:36,733] [pool-1-thread-8] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-03-16 01:21:37,260] [pool-1-thread-6] Initializing /data/david/tl4.tif: [testng] [2024-03-16 01:21:38,435] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-03-16 01:21:38,617] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-03-16 01:21:38,800] [pool-1-thread-10] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-03-16 01:21:38,975] [pool-1-thread-7] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-03-16 01:21:39,122] [pool-1-thread-4] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-03-16 01:21:41,450] [pool-1-thread-5] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-03-16 01:21:41,795] [pool-1-thread-11] Initializing /data/samples/zserEight.stk: [testng] [2024-03-16 01:21:42,183] [pool-1-thread-1] Initializing /data/aaron/metamorph.stk: [testng] [2024-03-16 01:21:42,785] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-16 01:21:44,199] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-03-16 01:21:44,642] [pool-1-thread-5] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-03-16 01:22:05,842] [pool-1-thread-11] Initializing /data/alex/Selected FITC.stk: [testng] [2024-03-16 01:22:06,505] [pool-1-thread-1] Initializing /data/samples/zser24.stk: [testng] [2024-03-16 01:22:07,663] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-03-16 01:22:07,833] [pool-1-thread-10] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-03-16 01:22:09,263] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-16 01:22:11,298] [pool-1-thread-3] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-03-16 01:22:11,714] [pool-1-thread-7] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-03-16 01:22:12,641] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-03-16 01:22:12,987] [pool-1-thread-11] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-03-16 01:22:13,346] [pool-1-thread-12] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-03-16 01:22:14,475] [pool-1-thread-8] Initializing 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[pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-03-16 01:22:27,145] [pool-1-thread-8] Used files list does not include base file [testng] [2024-03-16 01:22:27,638] [pool-1-thread-4] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2024-03-16 01:22:29,412] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-16 01:22:29,932] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-03-16 01:22:32,166] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-03-16 01:22:33,379] [pool-1-thread-4] Initializing /data/josh/2101to400astk.stk: [testng] [2024-03-16 01:22:39,373] [pool-1-thread-9] Initializing /data/qa-16887/m-01.tif: [testng] [2024-03-16 01:22:40,445] [pool-1-thread-8] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-03-16 01:22:40,941] 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-03-16 01:22:42,573] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-03-16 01:22:44,167] [pool-1-thread-12] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-03-16 01:22:44,645] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-03-16 01:22:45,363] [pool-1-thread-1] Used files list does not include base file [testng] [2024-03-16 01:22:46,634] [pool-1-thread-11] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-03-16 01:22:47,445] [pool-1-thread-9] Initializing /data/samples/10xcalib.stk: [testng] [2024-03-16 01:22:48,820] [pool-1-thread-10] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-03-16 01:22:51,180] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-16 01:22:51,767] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-03-16 01:22:52,281] [pool-1-thread-8] Initializing /data/josh/2101to600b.stk: [testng] [2024-03-16 01:22:56,263] [pool-1-thread-9] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-03-16 01:22:58,001] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-03-16 01:23:00,604] [pool-1-thread-6] Initializing /data/cumol-test-series/23.001: [testng] [2024-03-16 01:23:03,135] [pool-1-thread-11] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-03-16 01:23:03,940] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-03-16 01:23:04,549] [pool-1-thread-10] Used files list does not include base file [testng] [2024-03-16 01:23:05,622] [pool-1-thread-9] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-03-16 01:23:06,865] [pool-1-thread-12] Initializing 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01:23:40,855] [pool-1-thread-8] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-03-16 01:23:41,954] [pool-1-thread-11] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-03-16 01:23:43,952] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-03-16 01:23:44,812] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-16 01:23:46,320] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-03-16 01:23:48,504] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-03-16 01:23:51,061] [pool-1-thread-9] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-03-16 01:23:53,728] [pool-1-thread-1] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-03-16 01:23:57,951] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-03-16 01:24:00,177] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-03-16 01:24:01,380] [pool-1-thread-1] Initializing /data/steve/Experiment2.tif: [testng] [2024-03-16 01:24:04,048] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-03-16 01:24:04,808] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-03-16 01:24:05,288] [pool-1-thread-1] Initializing /data/jerome/deconv.STK: [testng] [2024-03-16 01:24:07,238] [pool-1-thread-2] Initializing /data/qa-16915/m-04.tif: [testng] [2024-03-16 01:24:08,287] [pool-1-thread-8] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-03-16 01:24:09,214] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-16 01:24:09,903] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-16 01:24:10,544] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-03-16 01:24:11,236] [pool-1-thread-10] Used files list does not include base file [testng] [2024-03-16 01:24:13,766] [pool-1-thread-2] Initializing /data/josh/2101to800.stk: [testng] [2024-03-16 01:24:16,702] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-03-16 01:24:19,018] [pool-1-thread-1] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2024-03-16 01:24:20,827] [pool-1-thread-6] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-03-16 01:24:22,793] [pool-1-thread-1] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-03-16 01:24:23,952] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-16 01:24:24,754] [pool-1-thread-7] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-03-16 01:24:26,753] [pool-1-thread-6] Initializing /data/thomas/test.tif: [testng] [2024-03-16 01:24:28,170] [pool-1-thread-1] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-03-16 01:24:28,697] [pool-1-thread-8] Initializing /data/qa-16915/m-02.tif: [testng] [2024-03-16 01:24:30,736] [pool-1-thread-6] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-03-16 01:24:33,146] [pool-1-thread-1] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-03-16 01:24:35,346] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-03-16 01:24:35,945] [pool-1-thread-10] Used files list does not include base file [testng] [2024-03-16 01:24:35,947] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-03-16 01:24:41,038] [pool-1-thread-8] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-03-16 01:24:41,673] [pool-1-thread-4] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-03-16 01:24:42,406] [pool-1-thread-7] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-16 01:24:43,967] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-03-16 01:24:48,317] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-03-16 01:24:53,968] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-03-16 01:24:55,814] [pool-1-thread-4] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-03-16 01:24:59,705] [pool-1-thread-9] Initializing 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01:25:15,593] [pool-1-thread-1] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-03-16 01:25:16,244] [pool-1-thread-7] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-03-16 01:25:16,927] [pool-1-thread-12] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-03-16 01:25:19,763] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-16 01:25:20,326] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-03-16 01:25:20,848] [pool-1-thread-12] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-03-16 01:25:22,055] [pool-1-thread-1] Initializing /data/thomas/t_test2001.tif: [testng] [2024-03-16 01:25:23,707] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-03-16 01:25:24,433] [pool-1-thread-8] Used files list does not include base file [testng] [2024-03-16 01:25:24,817] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-16 01:25:25,458] [pool-1-thread-7] Used files list does not include base file [testng] [2024-03-16 01:25:26,256] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-03-16 01:25:27,009] [pool-1-thread-1] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-03-16 01:25:30,052] [pool-1-thread-9] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-03-16 01:25:30,994] [pool-1-thread-12] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-03-16 01:25:35,639] [pool-1-thread-2] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-03-16 01:25:37,674] [pool-1-thread-12] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-03-16 01:25:59,092] [pool-1-thread-7] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-03-16 01:26:01,700] [pool-1-thread-9] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-03-16 01:26:04,016] [pool-1-thread-2] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-03-16 01:26:06,536] [pool-1-thread-7] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-03-16 01:26:12,905] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-03-16 01:26:14,527] [pool-1-thread-9] Used files list does not include base file [testng] [2024-03-16 01:26:17,187] [pool-1-thread-2] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-03-16 01:26:23,285] [pool-1-thread-2] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-03-16 01:26:24,343] [pool-1-thread-8] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-03-16 01:26:29,662] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-03-16 01:26:33,551] [pool-1-thread-2] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-03-16 01:26:35,875] [pool-1-thread-11] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-03-16 01:26:42,285] [pool-1-thread-11] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-03-16 01:26:43,442] [pool-1-thread-8] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-03-16 01:26:50,473] [pool-1-thread-11] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-03-16 01:26:51,623] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-03-16 01:26:56,535] [pool-1-thread-11] Initializing /data/qa-16915/m-01.tif: [testng] [2024-03-16 01:27:02,209] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-03-16 01:27:04,518] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-03-16 01:27:05,624] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-16 01:27:07,963] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-03-16 01:27:10,265] [pool-1-thread-9] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-03-16 01:27:17,714] [pool-1-thread-8] Initializing /data/jae/RGB_s34.tif: [testng] [2024-03-16 01:27:24,675] [pool-1-thread-8] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-03-16 01:27:27,131] [pool-1-thread-9] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-03-16 01:27:31,290] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-03-16 01:27:32,494] [pool-1-thread-10] Used files list does not include base file [testng] [2024-03-16 01:27:41,836] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-03-16 01:27:46,365] [pool-1-thread-11] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-03-16 01:27:47,238] [pool-1-thread-9] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-03-16 01:27:48,688] [pool-1-thread-8] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-03-16 01:27:53,096] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-03-16 01:27:54,713] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-16 01:27:57,064] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-03-16 01:28:10,321] [pool-1-thread-9] Initializing /data/ascb/mt aim.tif: [testng] [2024-03-16 01:28:13,306] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-03-16 01:28:18,762] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-16 01:28:20,661] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-03-16 01:28:21,714] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-16 01:28:22,815] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-16 01:28:26,801] [pool-1-thread-10] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-03-16 01:28:33,944] [pool-1-thread-9] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-03-16 01:28:35,533] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-03-16 01:28:40,564] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-16 01:28:41,903] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-03-16 01:28:43,042] [pool-1-thread-12] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 70 minutes 0 seconds Finished: SUCCESS