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Started by upstream project "BIOFORMATS-test-repo" build number 244 originally caused by: Started by upstream project "Trigger" build number 268 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins9276697952995929890.sh + '[' lim = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_38347_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:22:18,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:22:18,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:22:18,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:22:18,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:22:18,432 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:22:18,432 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:22:18,432 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:22:18,432 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:22:18,432 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5d534f5d - End of configuration. [testng] 00:22:18,433 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@51c668e3 - Registering current configuration as safe fallback point [testng] 00:22:18,433 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2e6a8155 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 425 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-03 00:22:18,443] [main] java.version = 17.0.2 [testng] 00:22:18,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:22:18,446 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:18,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-03_00-22-18.log] [testng] 00:22:18,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-03 00:22:18,489] [main] testng.directory = /data [testng] [2024-11-03 00:22:18,489] [main] testng.configDirectory = /config [testng] [2024-11-03 00:22:18,497] [main] testng.multiplier = 1.0 [testng] [2024-11-03 00:22:18,498] [main] testng.in-memory = false [testng] [2024-11-03 00:22:18,498] [main] testng.allow-missing = false [testng] [2024-11-03 00:22:18,498] [main] user.language = en [testng] [2024-11-03 00:22:18,498] [main] user.country = ${user.country} [testng] [2024-11-03 00:22:18,498] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-03 00:22:19,061] [main] ---------------------------------------- [testng] [2024-11-03 00:22:19,061] [main] Total files: 21 [testng] [2024-11-03 00:22:19,061] [main] Scan time: 0.563 s (26 ms/file) [testng] [2024-11-03 00:22:19,062] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-03 00:22:24,103] [pool-1-thread-1] Initializing /data/venu/Kontrolle0007.lim: [testng] 00:22:24,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:22:24,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:24,106 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-03_00-22-24.log] [testng] 00:22:24,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@460a0a6f - End of configuration. [testng] [2024-11-03 00:22:24,374] [pool-1-thread-12] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:22:24,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:22:24,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:24,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-03_00-22-24.log] [testng] 00:22:24,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42518032 - End of configuration. [testng] [2024-11-03 00:22:24,572] [pool-1-thread-11] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:22:24,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:22:24,573 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:24,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-03_00-22-24.log] [testng] 00:22:24,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@722e9eb6 - End of configuration. [testng] [2024-11-03 00:22:24,785] [pool-1-thread-10] Initializing /data/venu/Kontrolle0012.lim: [testng] 00:22:24,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:22:24,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:24,786 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-03_00-22-24.log] [testng] 00:22:24,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5014699 - End of configuration. [testng] [2024-11-03 00:22:24,997] [pool-1-thread-9] Initializing /data/venu/Kontrolle0008.lim: [testng] 00:22:24,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:22:24,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:24,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-03_00-22-24.log] [testng] 00:22:24,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b0ab901 - End of configuration. [testng] [2024-11-03 00:22:25,201] [pool-1-thread-8] Initializing /data/venu/Kontrolle0021.lim: [testng] 00:22:25,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:22:25,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:25,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-03_00-22-25.log] [testng] 00:22:25,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf1ffcb - End of configuration. [testng] [2024-11-03 00:22:25,409] [pool-1-thread-7] Initializing /data/venu/Kontrolle0010.lim: [testng] 00:22:25,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:22:25,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:25,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-03_00-22-25.log] [testng] 00:22:25,411 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70c3f091 - End of configuration. [testng] [2024-11-03 00:22:25,601] [pool-1-thread-6] Initializing /data/venu/Kontrolle0016.lim: [testng] 00:22:25,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:22:25,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:25,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-03_00-22-25.log] [testng] 00:22:25,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c8d263e - End of configuration. [testng] [2024-11-03 00:22:25,810] [pool-1-thread-5] Initializing /data/venu/Kontrolle0017.lim: [testng] 00:22:25,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:22:25,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:25,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-03_00-22-25.log] [testng] 00:22:25,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66123dd0 - End of configuration. [testng] [2024-11-03 00:22:26,013] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] 00:22:26,013 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:22:26,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:26,014 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-03_00-22-26.log] [testng] 00:22:26,014 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f51bdec - End of configuration. [testng] [2024-11-03 00:22:26,233] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim: [testng] 00:22:26,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:22:26,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:26,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-03_00-22-26.log] [testng] 00:22:26,234 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b62e28d - End of configuration. [testng] [2024-11-03 00:22:26,436] [pool-1-thread-2] Initializing /data/venu/Kontrolle0001.lim: [testng] 00:22:26,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:22:26,436 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:22:26,436 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-03_00-22-26.log] [testng] 00:22:26,437 |-INFO in ch.qos.logback.core.sift.SiftProcessor@284f671b - End of configuration. [testng] [2024-11-03 00:22:32,070] [pool-1-thread-8] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-11-03 00:22:32,266] [pool-1-thread-9] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-11-03 00:22:32,455] [pool-1-thread-5] Initializing /data/venu/Kontrolle0020.lim: [testng] [2024-11-03 00:22:32,640] [pool-1-thread-12] Initializing /data/venu/Kontrolle0013.lim: [testng] [2024-11-03 00:22:32,843] [pool-1-thread-2] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-11-03 00:22:33,054] [pool-1-thread-1] Initializing /data/venu/Kontrolle0019.lim: [testng] [2024-11-03 00:22:33,227] [pool-1-thread-10] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-11-03 00:22:33,409] [pool-1-thread-4] Initializing /data/venu/Kontrolle0018.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 24 seconds Finished: SUCCESS