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Started by upstream project "BIOFORMATS-test-repo" build number 244 originally caused by: Started by upstream project "Trigger" build number 268 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins2486671974257527776.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_38374_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:42:28,735 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:42:28,736 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 00:42:28,736 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:42:28,737 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:42:28,738 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:42:28,738 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:42:28,738 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:42:28,738 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:42:28,739 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:42:28,739 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:42:28,740 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:42:28,740 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:42:28,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:42:28,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:42:28,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:42:28,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:42:28,926 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:42:28,926 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:42:28,927 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:42:28,927 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:42:28,927 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 00:42:28,928 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 00:42:28,928 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-03 00:42:28,937] [main] java.version = 17.0.2 [testng] 00:42:28,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:42:28,944 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:42:28,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-03_00-42-28.log] [testng] 00:42:28,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-03 00:42:28,996] [main] testng.directory = /data [testng] [2024-11-03 00:42:28,997] [main] testng.configDirectory = /config [testng] [2024-11-03 00:42:29,006] [main] testng.multiplier = 1.0 [testng] [2024-11-03 00:42:29,007] [main] testng.in-memory = false [testng] [2024-11-03 00:42:29,007] [main] testng.allow-missing = false [testng] [2024-11-03 00:42:29,007] [main] user.language = en [testng] [2024-11-03 00:42:29,007] [main] user.country = ${user.country} [testng] [2024-11-03 00:42:29,007] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-03 00:42:40,427] [main] ---------------------------------------- [testng] [2024-11-03 00:42:40,427] [main] Total files: 259 [testng] [2024-11-03 00:42:40,428] [main] Scan time: 11.42 s (44 ms/file) [testng] [2024-11-03 00:42:40,428] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-03 00:48:54,893] [pool-1-thread-1] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] 00:48:54,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:48:54,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:54,895 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-03_00-48-54.log] [testng] 00:48:54,895 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31a264c5 - End of configuration. [testng] [2024-11-03 00:48:59,215] [pool-1-thread-12] Initializing /data/yasunori/series_1.oib: [testng] 00:48:59,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:48:59,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:59,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-03_00-48-59.log] [testng] 00:48:59,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fefc15a - End of configuration. [testng] [2024-11-03 00:48:59,465] [pool-1-thread-11] Initializing /data/simon/never_worked.oib: [testng] 00:48:59,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:48:59,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:59,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-03_00-48-59.log] [testng] 00:48:59,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@340030bc - End of configuration. [testng] [2024-11-03 00:48:59,651] [pool-1-thread-10] Initializing /data/satoshi/60x_5x_1.oif: [testng] 00:48:59,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:48:59,651 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:59,652 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-03_00-48-59.log] [testng] 00:48:59,652 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64b7ea9 - End of configuration. [testng] [2024-11-03 00:48:59,912] [pool-1-thread-9] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] 00:48:59,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:48:59,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:48:59,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-03_00-48-59.log] [testng] 00:48:59,913 |-INFO in ch.qos.logback.core.sift.SiftProcessor@436c8730 - End of configuration. [testng] [2024-11-03 00:49:00,036] [pool-1-thread-8] Initializing /data/david/Image0016.oif: [testng] 00:49:00,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:49:00,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:00,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-03_00-49-00.log] [testng] 00:49:00,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47b92663 - End of configuration. [testng] [2024-11-03 00:49:00,222] [pool-1-thread-7] Initializing /data/brian/PA-GFP-3.oib: [testng] 00:49:00,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:49:00,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:00,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-03_00-49-00.log] [testng] 00:49:00,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b45ebd0 - End of configuration. [testng] [2024-11-03 00:49:00,645] [pool-1-thread-6] Initializing /data/stefan/cytosol_03e.oib: [testng] 00:49:00,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:49:00,646 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:00,647 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-03_00-49-00.log] [testng] 00:49:00,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@240da70a - End of configuration. [testng] [2024-11-03 00:49:01,288] [pool-1-thread-5] Initializing /data/johannes/Image0010/Image0010.oif: [testng] 00:49:01,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:49:01,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:01,288 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-03_00-49-01.log] [testng] 00:49:01,289 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ca9e1b7 - End of configuration. [testng] [2024-11-03 00:49:01,528] [pool-1-thread-4] Initializing /data/brian/CFP-GFP2.oib: [testng] 00:49:01,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:49:01,528 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:01,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-03_00-49-01.log] [testng] 00:49:01,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f85131 - End of configuration. [testng] [2024-11-03 00:49:01,774] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oif: [testng] 00:49:01,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:49:01,775 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:01,776 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-03_00-49-01.log] [testng] 00:49:01,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2858bf4a - End of configuration. [testng] [2024-11-03 00:49:02,472] [pool-1-thread-2] Initializing /data/glen/Null file/test no change.oif: [testng] 00:49:02,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:49:02,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:49:02,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-03_00-49-02.log] [testng] 00:49:02,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6899e5dd - End of configuration. [testng] [2024-11-03 00:49:05,940] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-03 00:49:06,423] [pool-1-thread-11] Initializing /data/marc/V0606L.oib: [testng] [2024-11-03 00:49:08,004] [pool-1-thread-12] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-03 00:49:13,158] [pool-1-thread-4] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-03 00:49:13,528] [pool-1-thread-7] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-03 00:49:15,880] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-03 00:49:17,621] [pool-1-thread-4] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-03 00:49:18,856] [pool-1-thread-9] Initializing /data/glen/simulstack.oib: [testng] [2024-11-03 00:49:20,502] [pool-1-thread-4] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-03 00:49:21,439] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-11-03 00:49:23,534] [pool-1-thread-9] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-11-03 00:49:24,229] [pool-1-thread-2] Initializing /data/marc/V0606J.oib: [testng] [2024-11-03 00:49:27,383] [pool-1-thread-7] Initializing /data/glen/simulstack.oif: [testng] [2024-11-03 00:49:28,452] [pool-1-thread-9] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-11-03 00:49:28,770] [pool-1-thread-6] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-03 00:49:30,568] [pool-1-thread-11] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-03 00:49:32,106] [pool-1-thread-6] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-03 00:49:36,243] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-03 00:49:42,231] [pool-1-thread-8] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-03 00:49:44,396] [pool-1-thread-8] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-03 00:49:46,852] [pool-1-thread-2] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-03 00:49:48,358] [pool-1-thread-8] Initializing /data/allan/62909#1.oib: [testng] [2024-11-03 00:49:49,135] [pool-1-thread-9] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-03 00:49:49,677] [pool-1-thread-2] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-03 00:49:50,673] [pool-1-thread-8] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-03 00:49:52,912] [pool-1-thread-9] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2024-11-03 00:49:53,442] [pool-1-thread-2] Initializing /data/stefan/cytosol_08b.oif: [testng] [2024-11-03 00:49:58,800] [pool-1-thread-8] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-03 00:50:00,051] [pool-1-thread-9] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-03 00:50:02,292] [pool-1-thread-8] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-03 00:50:03,710] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-03 00:50:06,196] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-11-03 00:50:06,566] [pool-1-thread-9] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-03 00:50:07,405] [pool-1-thread-5] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-03 00:50:08,046] [pool-1-thread-6] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-03 00:50:17,107] [pool-1-thread-8] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-03 00:50:17,759] [pool-1-thread-5] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-03 00:50:26,110] [pool-1-thread-8] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-03 00:50:26,587] [pool-1-thread-9] Initializing /data/molly/11OCT4.OIF: [testng] [2024-11-03 00:50:33,024] [pool-1-thread-10] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-03 00:50:53,128] [pool-1-thread-8] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-03 00:50:56,100] [pool-1-thread-8] Initializing /data/david/Image0016.oib: [testng] [2024-11-03 00:50:58,490] [pool-1-thread-8] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-03 00:51:20,102] [pool-1-thread-8] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-03 00:51:22,544] [pool-1-thread-8] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-03 00:51:48,453] [pool-1-thread-8] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-11-03 00:51:53,820] [pool-1-thread-8] Initializing /data/jae/Image0001.oib: [testng] [2024-11-03 00:51:58,450] [pool-1-thread-8] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-03 00:52:04,895] [pool-1-thread-8] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-11-03 00:52:37,414] [pool-1-thread-8] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-03 00:52:41,839] [pool-1-thread-8] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-03 00:52:43,683] [pool-1-thread-8] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-03 00:52:48,988] [pool-1-thread-8] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-03 00:52:51,887] [pool-1-thread-8] Initializing /data/molly/11OCT9.OIF: [testng] [2024-11-03 00:54:52,862] [pool-1-thread-4] Initializing /data/johannes/step4.bmp: [testng] [2024-11-03 00:54:55,579] [pool-1-thread-4] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-11-03 00:55:00,690] [pool-1-thread-4] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2024-11-03 00:55:08,426] [pool-1-thread-4] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-03 00:55:12,062] [pool-1-thread-4] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-03 00:55:35,429] [pool-1-thread-4] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-03 00:55:40,188] [pool-1-thread-4] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-03 00:59:57,249] [pool-1-thread-7] Initializing /data/sten/01.oib: [testng] [2024-11-03 01:00:00,916] [pool-1-thread-7] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-03 01:00:04,777] [pool-1-thread-7] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-03 01:00:52,207] [pool-1-thread-11] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2024-11-03 01:00:55,690] [pool-1-thread-11] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-03 01:01:32,762] [pool-1-thread-11] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-03 01:01:38,057] [pool-1-thread-11] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-03 01:01:41,376] [pool-1-thread-11] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-03 01:01:46,263] [pool-1-thread-11] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] [2024-11-03 01:01:49,885] [pool-1-thread-11] Initializing /data/aryeh/1h.oib: [testng] [2024-11-03 01:01:58,793] [pool-1-thread-11] Initializing /data/glen/111407.oif: [testng] [2024-11-03 01:02:07,362] [pool-1-thread-12] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-03 01:02:11,251] [pool-1-thread-12] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-03 01:02:14,732] [pool-1-thread-12] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2024-11-03 01:05:56,198] [pool-1-thread-9] Initializing /data/monica/Image0056.oif: [testng] [2024-11-03 01:06:35,543] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-03 01:06:39,702] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-03 01:06:43,129] [pool-1-thread-9] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-11-03 01:06:48,000] [pool-1-thread-9] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-03 01:06:52,038] [pool-1-thread-9] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-03 01:07:24,412] [pool-1-thread-3] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-03 01:07:40,348] [pool-1-thread-10] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-03 01:08:02,795] [pool-1-thread-5] Initializing /data/christian/20min.oif: [testng] [2024-11-03 01:08:08,466] [pool-1-thread-10] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-03 01:08:16,547] [pool-1-thread-5] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-03 01:08:20,749] [pool-1-thread-5] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-03 01:08:24,614] [pool-1-thread-2] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-03 01:08:29,523] [pool-1-thread-2] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-03 01:08:32,216] [pool-1-thread-10] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-03 01:08:37,851] [pool-1-thread-10] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-03 01:08:53,295] [pool-1-thread-2] Initializing /data/glen/Image0002.oif: [testng] [2024-11-03 01:09:26,177] [pool-1-thread-9] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-03 01:09:28,791] [pool-1-thread-9] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-03 01:09:34,410] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-03 01:09:40,483] [pool-1-thread-9] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-03 01:09:45,021] [pool-1-thread-9] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-03 01:09:49,919] [pool-1-thread-9] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-03 01:09:54,103] [pool-1-thread-9] Initializing /data/michael/CELL3.oib: [testng] [2024-11-03 01:09:57,759] [pool-1-thread-9] Initializing /data/brian/FLIP.oib: [testng] [2024-11-03 01:10:03,240] [pool-1-thread-9] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-03 01:10:07,456] [pool-1-thread-5] Initializing /data/johannes/step1.bmp: [testng] [2024-11-03 01:10:08,057] [pool-1-thread-9] Initializing /data/molly/11OCT5.OIF: [testng] [2024-11-03 01:10:19,736] [pool-1-thread-5] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-03 01:10:23,407] [pool-1-thread-5] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-03 01:10:28,650] [pool-1-thread-12] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-03 01:10:32,134] [pool-1-thread-10] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-03 01:10:33,727] [pool-1-thread-12] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-03 01:10:35,927] [pool-1-thread-10] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-03 01:10:40,950] [pool-1-thread-12] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-03 01:10:42,836] [pool-1-thread-12] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-03 01:11:28,372] [pool-1-thread-6] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2024-11-03 01:11:31,451] [pool-1-thread-12] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-03 01:11:47,944] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-03 01:11:54,954] [pool-1-thread-6] Initializing /data/karl/Image0009.oib: [testng] [2024-11-03 01:11:57,960] [pool-1-thread-6] Initializing /data/molly/11OCT2.OIF: [testng] [2024-11-03 01:13:01,911] [pool-1-thread-11] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2024-11-03 01:13:06,071] [pool-1-thread-11] Initializing /data/johannes/step3.bmp: [testng] [2024-11-03 01:13:07,970] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-03 01:13:13,118] [pool-1-thread-11] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-03 01:13:18,668] [pool-1-thread-11] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-03 01:13:22,894] [pool-1-thread-11] Initializing /data/stefan/cytosol_01a.oif: [testng] [2024-11-03 01:14:36,425] [pool-1-thread-3] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-03 01:14:43,981] [pool-1-thread-3] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-03 01:14:46,777] [pool-1-thread-4] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-03 01:14:52,609] [pool-1-thread-4] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2024-11-03 01:15:29,829] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-03 01:15:39,038] [pool-1-thread-4] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2024-11-03 01:24:36,265] [pool-1-thread-3] Initializing /data/pedro/plv-test.oib: [testng] [2024-11-03 01:24:41,111] [pool-1-thread-3] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-03 01:24:47,379] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2024-11-03 01:24:49,914] [pool-1-thread-3] Initializing /data/johannes/step2.bmp: [testng] 02:30:51,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:30:51,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:30:51,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-03_02-30-51.log] [testng] 02:30:51,829 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f467bb9 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 108 minutes 26 seconds Finished: SUCCESS