![[Jenkins]](/jenkins/static/0008761a/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 29 originally caused by: Started by upstream project "Trigger" build number 32 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins2385263961989346425.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_3839_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:02:54,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:02:54,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:02:54,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:02:54,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:02:54,416 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:02:54,416 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:02:54,416 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:02:54,417 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:02:54,417 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration. [testng] 02:02:54,418 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point [testng] 02:02:54,418 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 424 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-10 02:02:54,435] [main] java.version = 17.0.2 [testng] 02:02:54,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:02:54,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:54,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-10_02-02-54.log] [testng] 02:02:54,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-04-10 02:02:54,534] [main] testng.directory = /data [testng] [2024-04-10 02:02:54,535] [main] testng.configDirectory = /config [testng] [2024-04-10 02:02:54,547] [main] testng.multiplier = 1.0 [testng] [2024-04-10 02:02:54,548] [main] testng.in-memory = false [testng] [2024-04-10 02:02:54,548] [main] testng.allow-missing = false [testng] [2024-04-10 02:02:54,548] [main] user.language = en [testng] [2024-04-10 02:02:54,548] [main] user.country = ${user.country} [testng] [2024-04-10 02:02:54,548] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-10 02:02:55,031] [main] ---------------------------------------- [testng] [2024-04-10 02:02:55,031] [main] Total files: 19 [testng] [2024-04-10 02:02:55,032] [main] Scan time: 0.482 s (25 ms/file) [testng] [2024-04-10 02:02:55,032] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-10 02:02:56,930] [pool-1-thread-1] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] 02:02:56,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:02:56,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:56,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-10_02-02-56.log] [testng] 02:02:56,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@156450f8 - End of configuration. [testng] [2024-04-10 02:02:56,973] [pool-1-thread-12] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 02:02:56,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:02:56,974 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:56,975 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-10_02-02-56.log] [testng] 02:02:56,975 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72adcbcc - End of configuration. [testng] [2024-04-10 02:02:57,083] [pool-1-thread-11] Initializing /data/samples/400R PICT0003.MRW: [testng] 02:02:57,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:02:57,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:57,089 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-10_02-02-57.log] [testng] 02:02:57,089 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dfa5de1 - End of configuration. [testng] [2024-04-10 02:02:57,127] [pool-1-thread-10] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] 02:02:57,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:02:57,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:57,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-10_02-02-57.log] [testng] 02:02:57,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b053870 - End of configuration. [testng] [2024-04-10 02:02:57,160] [pool-1-thread-9] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] 02:02:57,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:02:57,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:57,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-10_02-02-57.log] [testng] 02:02:57,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ac7ccde - End of configuration. [testng] [2024-04-10 02:02:57,250] [pool-1-thread-8] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] 02:02:57,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:02:57,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:57,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-10_02-02-57.log] [testng] 02:02:57,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9c316fe - End of configuration. [testng] [2024-04-10 02:02:57,292] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] 02:02:57,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:02:57,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:57,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-10_02-02-57.log] [testng] 02:02:57,293 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5050a326 - End of configuration. [testng] [2024-04-10 02:02:57,350] [pool-1-thread-6] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 02:02:57,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:02:57,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:57,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-10_02-02-57.log] [testng] 02:02:57,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6111b044 - End of configuration. [testng] [2024-04-10 02:02:57,416] [pool-1-thread-5] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 02:02:57,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:02:57,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:57,418 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-10_02-02-57.log] [testng] 02:02:57,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66d7f9de - End of configuration. [testng] [2024-04-10 02:02:57,471] [pool-1-thread-4] Initializing /data/samples/1600R PICT0005.MRW: [testng] 02:02:57,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:02:57,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:57,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-10_02-02-57.log] [testng] 02:02:57,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@570fad82 - End of configuration. [testng] [2024-04-10 02:02:57,535] [pool-1-thread-3] Initializing /data/samples/3200R PICT0006.MRW: [testng] 02:02:57,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:02:57,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:57,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-10_02-02-57.log] [testng] 02:02:57,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36f93339 - End of configuration. [testng] [2024-04-10 02:02:57,609] [pool-1-thread-2] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 02:02:57,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:02:57,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:02:57,611 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-10_02-02-57.log] [testng] 02:02:57,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35ea13b4 - End of configuration. [testng] [2024-04-10 02:03:04,253] [pool-1-thread-2] Initializing /data/samples/100R PICT0001.MRW: [testng] [2024-04-10 02:03:04,295] [pool-1-thread-12] Initializing /data/samples/200R PICT0002.MRW: [testng] [2024-04-10 02:03:04,333] [pool-1-thread-11] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] [2024-04-10 02:03:04,369] [pool-1-thread-8] Initializing /data/samples/800R PICT0010.MRW: [testng] [2024-04-10 02:03:04,402] [pool-1-thread-5] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] [2024-04-10 02:03:04,496] [pool-1-thread-7] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] [2024-04-10 02:03:04,527] [pool-1-thread-10] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS