![[Jenkins]](/jenkins/static/03a0bb70/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 244 originally caused by: Started by upstream project "Trigger" build number 268 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins3867462921890217710.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_38461_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:58:51,906 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:58:51,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 02:58:51,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:58:51,908 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:58:51,909 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:58:51,909 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:58:51,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:58:51,909 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:58:51,910 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:58:51,910 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:58:51,911 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:58:51,911 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:58:52,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:58:52,062 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:58:52,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:58:52,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:58:52,087 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:58:52,087 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:58:52,087 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:58:52,087 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:58:52,087 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 02:58:52,088 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 02:58:52,088 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 178 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-03 02:58:52,096] [main] java.version = 17.0.2 [testng] 02:58:52,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:58:52,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:58:52,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-03_02-58-52.log] [testng] 02:58:52,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-03 02:58:52,140] [main] testng.directory = /data [testng] [2024-11-03 02:58:52,140] [main] testng.configDirectory = /config [testng] [2024-11-03 02:58:52,148] [main] testng.multiplier = 1.0 [testng] [2024-11-03 02:58:52,149] [main] testng.in-memory = false [testng] [2024-11-03 02:58:52,149] [main] testng.allow-missing = false [testng] [2024-11-03 02:58:52,149] [main] user.language = en [testng] [2024-11-03 02:58:52,149] [main] user.country = ${user.country} [testng] [2024-11-03 02:58:52,149] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-03 02:59:53,031] [main] ---------------------------------------- [testng] [2024-11-03 02:59:53,031] [main] Total files: 15735 [testng] [2024-11-03 02:59:53,032] [main] Scan time: 60.882 s (3 ms/file) [testng] [2024-11-03 02:59:53,032] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-03 03:00:43,921] [pool-1-thread-1] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] 03:00:43,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:00:43,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:43,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-03_03-00-43.log] [testng] 03:00:43,924 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d69b339 - End of configuration. [testng] [2024-11-03 03:00:44,199] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] 03:00:44,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:00:44,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:44,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-03_03-00-44.log] [testng] 03:00:44,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bb44eae - End of configuration. [testng] [2024-11-03 03:00:44,890] [pool-1-thread-11] Initializing /data/converted/converted/damian.tif: [testng] 03:00:44,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:00:44,890 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:44,891 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-03_03-00-44.log] [testng] 03:00:44,891 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d1dbe20 - End of configuration. [testng] [2024-11-03 03:00:45,187] [pool-1-thread-10] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] 03:00:45,187 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:00:45,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:45,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-03_03-00-45.log] [testng] 03:00:45,188 |-INFO in ch.qos.logback.core.sift.SiftProcessor@180dc5b - End of configuration. [testng] [2024-11-03 03:00:46,552] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] 03:00:46,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:00:46,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:46,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-03_03-00-46.log] [testng] 03:00:46,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fd67c27 - End of configuration. [testng] [2024-11-03 03:00:47,109] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] 03:00:47,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:00:47,109 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:47,110 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-03_03-00-47.log] [testng] 03:00:47,110 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ca29762 - End of configuration. [testng] [2024-11-03 03:00:47,705] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] 03:00:47,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:00:47,705 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:47,706 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-03_03-00-47.log] [testng] 03:00:47,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b2d131f - End of configuration. [testng] [2024-11-03 03:00:48,191] [pool-1-thread-6] Initializing /data/converted/sebastien/test.tif: [testng] 03:00:48,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:00:48,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:48,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-03_03-00-48.log] [testng] 03:00:48,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b511c76 - End of configuration. [testng] [2024-11-03 03:00:48,671] [pool-1-thread-5] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] 03:00:48,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:00:48,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:48,672 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-03_03-00-48.log] [testng] 03:00:48,672 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b6cb122 - End of configuration. [testng] [2024-11-03 03:00:49,081] [pool-1-thread-4] Initializing /data/othmar/mozaic.tif: [testng] 03:00:49,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:00:49,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:49,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-03_03-00-49.log] [testng] 03:00:49,082 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66c3fa18 - End of configuration. [testng] [2024-11-03 03:00:49,438] [pool-1-thread-3] Initializing /data/converted/michel/b.tif: [testng] 03:00:49,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:00:49,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:49,439 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-03_03-00-49.log] [testng] 03:00:49,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18b1697e - End of configuration. [testng] [2024-11-03 03:00:49,702] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] 03:00:49,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:00:49,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:49,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-03_03-00-49.log] [testng] 03:00:49,704 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16463d5c - End of configuration. [testng] [2024-11-03 03:01:01,206] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2024-11-03 03:01:05,829] [pool-1-thread-1] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2024-11-03 03:01:06,756] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2024-11-03 03:01:22,130] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2024-11-03 03:02:49,278] [pool-1-thread-5] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2024-11-03 03:02:52,263] [pool-1-thread-4] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2024-11-03 03:02:58,689] [pool-1-thread-1] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2024-11-03 03:03:12,175] [pool-1-thread-1] Initializing /data/converted/michel/e.tif: [testng] [2024-11-03 03:03:42,702] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2024-11-03 03:04:00,007] [pool-1-thread-4] Initializing /data/converted/michel/a.tif: [testng] [2024-11-03 03:04:02,621] [pool-1-thread-11] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2024-11-03 03:04:11,085] [pool-1-thread-4] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2024-11-03 03:04:18,279] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2024-11-03 03:04:34,192] [pool-1-thread-2] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2024-11-03 03:04:42,009] [pool-1-thread-7] Initializing /data/converted/kelsey/432x342BW.tif: [testng] [2024-11-03 03:04:52,200] [pool-1-thread-7] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2024-11-03 03:04:55,501] [pool-1-thread-2] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2024-11-03 03:04:58,030] [pool-1-thread-12] Initializing /data/converted/othmar/mozaic.tif: [testng] [2024-11-03 03:05:06,227] [pool-1-thread-6] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2024-11-03 03:05:07,630] [pool-1-thread-7] Initializing /data/converted/stephan/notok1.tif: [testng] [2024-11-03 03:05:22,400] [pool-1-thread-6] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2024-11-03 03:05:29,012] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2024-11-03 03:05:39,821] [pool-1-thread-3] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] [2024-11-03 03:05:42,037] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] [2024-11-03 03:06:03,028] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif: [testng] [2024-11-03 03:06:03,904] [pool-1-thread-7] Initializing /data/converted/converted/2chzt.tif: [testng] [2024-11-03 03:06:14,735] [pool-1-thread-2] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2024-11-03 03:06:18,339] [pool-1-thread-8] Initializing /data/converted/othmar/z-stack.tif: [testng] [2024-11-03 03:06:20,461] [pool-1-thread-11] Initializing /data/converted/vladan/vladan.tif: [testng] [2024-11-03 03:06:39,536] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2024-11-03 03:07:01,437] [pool-1-thread-12] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2024-11-03 03:07:32,586] [pool-1-thread-12] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2024-11-03 03:07:53,439] [pool-1-thread-12] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2024-11-03 03:08:07,653] [pool-1-thread-3] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2024-11-03 03:08:16,082] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2024-11-03 03:10:36,772] [pool-1-thread-6] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2024-11-03 03:11:06,298] [pool-1-thread-11] Initializing /data/converted/stephan/notok2.tif: [testng] [2024-11-03 03:11:35,278] [pool-1-thread-4] Initializing /data/scott/Slide133-08.tif: [testng] [2024-11-03 03:12:00,753] [pool-1-thread-4] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2024-11-03 03:12:04,427] [pool-1-thread-1] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2024-11-03 03:12:36,027] [pool-1-thread-4] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2024-11-03 03:12:47,347] [pool-1-thread-11] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2024-11-03 03:13:16,482] [pool-1-thread-11] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2024-11-03 03:13:24,393] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2024-11-03 03:13:44,300] [pool-1-thread-11] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2024-11-03 03:15:04,575] [pool-1-thread-12] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] [2024-11-03 03:16:39,874] [pool-1-thread-6] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2024-11-03 03:19:08,793] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2024-11-03 03:19:26,071] [pool-1-thread-10] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] [2024-11-03 03:19:33,438] [pool-1-thread-9] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2024-11-03 03:20:10,550] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2024-11-03 03:20:25,652] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2024-11-03 03:23:40,485] [pool-1-thread-3] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2024-11-03 03:24:02,363] [pool-1-thread-3] Initializing /data/converted/converted/mri-stack.tif: [testng] [2024-11-03 03:24:06,531] [pool-1-thread-8] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2024-11-03 03:24:20,834] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2024-11-03 03:24:36,837] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2024-11-03 03:26:11,989] [pool-1-thread-1] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2024-11-03 03:26:17,170] [pool-1-thread-4] Initializing /data/converted/sebastien/F1.tif: [testng] [2024-11-03 03:26:27,994] [pool-1-thread-10] Initializing /data/scott/Slide133-04.tif: [testng] [2024-11-03 03:26:35,674] [pool-1-thread-1] Initializing /data/converted/converted/2chz.tif: [testng] [2024-11-03 03:26:53,451] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2024-11-03 03:28:11,544] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] [2024-11-03 03:29:29,130] [pool-1-thread-5] Initializing /data/converted/karsten/Bild2.tif: [testng] [2024-11-03 03:29:34,912] [pool-1-thread-1] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2024-11-03 03:29:40,727] [pool-1-thread-4] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2024-11-03 03:30:08,403] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2024-11-03 03:30:27,269] [pool-1-thread-1] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2024-11-03 03:30:51,164] [pool-1-thread-1] Initializing /data/converted/michel/c.tif: [testng] [2024-11-03 03:31:05,630] [pool-1-thread-4] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2024-11-03 03:31:07,377] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2024-11-03 03:31:28,479] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2024-11-03 03:31:32,488] [pool-1-thread-3] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2024-11-03 03:32:04,751] [pool-1-thread-4] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2024-11-03 03:33:29,097] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] [2024-11-03 03:33:59,344] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2024-11-03 03:34:33,456] [pool-1-thread-10] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] [2024-11-03 03:35:06,647] [pool-1-thread-8] Initializing /data/converted/dietmar/138.tif: [testng] [2024-11-03 03:35:55,615] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] [2024-11-03 03:36:58,084] [pool-1-thread-11] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] [2024-11-03 03:38:44,634] [pool-1-thread-5] Initializing /data/converted/dietmar/137.tif: [testng] [2024-11-03 03:39:28,950] [pool-1-thread-6] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] [2024-11-03 03:39:37,311] [pool-1-thread-1] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2024-11-03 03:40:28,366] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2024-11-03 03:41:17,977] [pool-1-thread-7] Initializing /data/converted/karsten/Bild1.tif: [testng] [2024-11-03 03:41:27,498] [pool-1-thread-3] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2024-11-03 03:41:29,087] [pool-1-thread-6] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2024-11-03 03:41:51,028] [pool-1-thread-4] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2024-11-03 03:41:52,545] [pool-1-thread-7] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] [2024-11-03 03:42:11,852] [pool-1-thread-3] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2024-11-03 03:42:16,830] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2024-11-03 03:42:19,977] [pool-1-thread-7] Initializing /data/scott/Slide133-11.tif: [testng] [2024-11-03 03:42:34,189] [pool-1-thread-8] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] [2024-11-03 03:42:41,940] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2024-11-03 03:42:44,979] [pool-1-thread-7] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] [2024-11-03 03:43:24,933] [pool-1-thread-3] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] [2024-11-03 03:43:46,304] [pool-1-thread-3] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2024-11-03 03:43:52,678] [pool-1-thread-12] Initializing /data/converted/michel/d.tif: [testng] [2024-11-03 03:43:57,379] [pool-1-thread-10] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2024-11-03 03:44:19,769] [pool-1-thread-12] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] [2024-11-03 03:44:22,867] [pool-1-thread-10] Initializing /data/scott/Slide133-01.tif: [testng] [2024-11-03 03:44:37,753] [pool-1-thread-6] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2024-11-03 03:44:40,793] [pool-1-thread-12] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2024-11-03 03:44:49,035] [pool-1-thread-10] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2024-11-03 03:45:11,895] [pool-1-thread-10] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2024-11-03 03:45:19,131] [pool-1-thread-12] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2024-11-03 03:45:30,986] [pool-1-thread-5] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2024-11-03 03:45:37,714] [pool-1-thread-10] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] [2024-11-03 03:45:52,054] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2024-11-03 03:46:02,893] [pool-1-thread-10] Initializing /data/converted/nicolas/image.tif: [testng] [2024-11-03 03:46:09,794] [pool-1-thread-11] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2024-11-03 03:46:18,021] [pool-1-thread-11] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2024-11-03 03:46:24,640] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] 06:19:30,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:19:30,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:19:30,973 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-03_06-19-30.log] [testng] 06:19:30,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14ede6cb - End of configuration. [testng] 06:31:18,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:31:18,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:31:18,315 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-03_06-31-18.log] [testng] 06:31:18,315 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5039de18 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 212 minutes 33 seconds Finished: SUCCESS