![[Jenkins]](/jenkins/static/03a0bb70/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 244 originally caused by: Started by upstream project "Trigger" build number 268 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins5336897329341490583.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_38490_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:06:02,147 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 04:06:02,148 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service. [testng] 04:06:02,148 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:06:02,149 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:06:02,149 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:06:02,150 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:06:02,150 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:06:02,150 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:06:02,150 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:06:02,151 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:06:02,151 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:06:02,151 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:06:02,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:06:02,309 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:06:02,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:06:02,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:06:02,334 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:06:02,335 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:06:02,335 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:06:02,335 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:06:02,335 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration. [testng] 04:06:02,336 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point [testng] 04:06:02,336 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 186 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-03 04:06:02,344] [main] java.version = 17.0.2 [testng] 04:06:02,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:06:02,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:06:02,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-03_04-06-02.log] [testng] 04:06:02,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration. [testng] [2024-11-03 04:06:02,389] [main] testng.directory = /data [testng] [2024-11-03 04:06:02,389] [main] testng.configDirectory = /config [testng] [2024-11-03 04:06:02,398] [main] testng.multiplier = 1.0 [testng] [2024-11-03 04:06:02,398] [main] testng.in-memory = false [testng] [2024-11-03 04:06:02,398] [main] testng.allow-missing = false [testng] [2024-11-03 04:06:02,398] [main] user.language = en [testng] [2024-11-03 04:06:02,399] [main] user.country = ${user.country} [testng] [2024-11-03 04:06:02,399] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-11-03 04:06:23,776] [main] ---------------------------------------- [testng] [2024-11-03 04:06:23,776] [main] Total files: 22 [testng] [2024-11-03 04:06:23,776] [main] Scan time: 21.377 s (971 ms/file) [testng] [2024-11-03 04:06:23,776] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-03 04:08:09,234] [pool-1-thread-1] Initializing /data/converted/clown.ipw: [testng] 04:08:09,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:08:09,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:09,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-03_04-08-09.log] [testng] 04:08:09,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bd4ed8 - End of configuration. [testng] [2024-11-03 04:08:13,831] [pool-1-thread-12] Initializing /data/converted/dub01.seq: [testng] 04:08:13,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:08:13,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:13,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-03_04-08-13.log] [testng] 04:08:13,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b56e46a - End of configuration. [testng] [2024-11-03 04:08:17,745] [pool-1-thread-11] Initializing /data/samples/FLDUAL.TIF: [testng] 04:08:17,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:08:17,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:17,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-03_04-08-17.log] [testng] 04:08:17,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35349a0f - End of configuration. [testng] [2024-11-03 04:08:23,902] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 04:08:23,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:08:23,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:23,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-03_04-08-23.log] [testng] 04:08:23,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cabdd82 - End of configuration. [testng] [2024-11-03 04:08:26,795] [pool-1-thread-9] Initializing /data/converted/clown8c.seq: [testng] 04:08:26,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:08:26,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:26,796 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-03_04-08-26.log] [testng] 04:08:26,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ceb1308 - End of configuration. [testng] [2024-11-03 04:08:30,391] [pool-1-thread-8] Initializing /data/xiuwen/head2.seq: [testng] 04:08:30,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:08:30,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:30,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-03_04-08-30.log] [testng] 04:08:30,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16d2926d - End of configuration. [testng] [2024-11-03 04:08:34,067] [pool-1-thread-7] Initializing /data/converted/mitosis-test.ipw: [testng] 04:08:34,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:08:34,067 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:34,068 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-03_04-08-34.log] [testng] 04:08:34,068 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67b2b86 - End of configuration. [testng] [2024-11-03 04:08:37,019] [pool-1-thread-6] Initializing /data/converted/clown8c.tif: [testng] 04:08:37,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:08:37,020 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:37,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-03_04-08-37.log] [testng] 04:08:37,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d9df37 - End of configuration. [testng] [2024-11-03 04:08:42,988] [pool-1-thread-5] Initializing /data/converted/dub01.ipw: [testng] 04:08:42,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:08:42,988 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:42,989 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-03_04-08-42.log] [testng] 04:08:42,989 |-INFO in ch.qos.logback.core.sift.SiftProcessor@780420ad - End of configuration. [testng] [2024-11-03 04:08:44,443] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.seq: [testng] 04:08:44,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:08:44,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:44,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-03_04-08-44.log] [testng] 04:08:44,445 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58ca5b26 - End of configuration. [testng] [2024-11-03 04:08:46,299] [pool-1-thread-3] Initializing /data/converted/dub01.pic: [testng] 04:08:46,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:08:46,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:46,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-03_04-08-46.log] [testng] 04:08:46,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f6e09c9 - End of configuration. [testng] [2024-11-03 04:08:48,416] [pool-1-thread-2] Initializing /data/converted/mitosis-test.seq: [testng] 04:08:48,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:08:48,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:08:48,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-03_04-08-48.log] [testng] 04:08:48,418 |-INFO in ch.qos.logback.core.sift.SiftProcessor@145cdf9b - End of configuration. [testng] [2024-11-03 04:09:18,650] [pool-1-thread-3] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-11-03 04:09:27,492] [pool-1-thread-5] Initializing /data/converted/mitosis-test.tif: [testng] [2024-11-03 04:09:33,924] [pool-1-thread-1] Initializing /data/converted/clown8c.ipw: [testng] [2024-11-03 04:09:36,466] [pool-1-thread-7] Initializing /data/alex/AFAset0003.ips: [testng] [2024-11-03 04:09:39,241] [pool-1-thread-10] Initializing /data/samples/TISSUE.TIF: [testng] [2024-11-03 04:09:45,595] [pool-1-thread-12] Initializing /data/converted/clown.tif: [testng] [2024-11-03 04:09:48,484] [pool-1-thread-2] Initializing /data/samples/PROBE.TIF: [testng] [2024-11-03 04:09:50,810] [pool-1-thread-9] Initializing /data/converted/clown.seq: [testng] [2024-11-03 04:09:53,080] [pool-1-thread-4] Initializing /data/samples/HEART.SEQ: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 minutes 19 seconds Finished: SUCCESS