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Started by upstream project "BIOFORMATS-test-repo" build number 245 originally caused by: Started by upstream project "Trigger" build number 269 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins3888661122750847546.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_38538_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:31:01,805 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:31:01,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - No custom configurators were discovered as a service. [testng] 01:31:01,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:31:01,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:31:01,808 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:31:01,808 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:31:01,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:31:01,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:31:01,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:31:01,809 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:31:01,809 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:31:01,809 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:31:02,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:31:02,016 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:31:02,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:31:02,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:31:02,049 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:31:02,049 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:31:02,049 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:31:02,050 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:31:02,050 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7a69b07 - End of configuration. [testng] 01:31:02,051 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@636be97c - Registering current configuration as safe fallback point [testng] 01:31:02,051 |-INFO in ch.qos.logback.classic.util.ContextInitializer@79ad8b2f - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 243 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-11-04 01:31:02,061] [main] java.version = 1.8.0_342 [testng] 01:31:02,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:31:02,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:02,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-04_01-31-02.log] [testng] 01:31:02,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13c9d689 - End of configuration. [testng] [2024-11-04 01:31:02,110] [main] testng.directory = /data [testng] [2024-11-04 01:31:02,110] [main] testng.configDirectory = /config [testng] [2024-11-04 01:31:02,121] [main] testng.multiplier = 1.0 [testng] [2024-11-04 01:31:02,122] [main] testng.in-memory = false [testng] [2024-11-04 01:31:02,122] [main] testng.allow-missing = false [testng] [2024-11-04 01:31:02,122] [main] user.language = fr [testng] [2024-11-04 01:31:02,122] [main] user.country = FR [testng] [2024-11-04 01:31:02,122] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-11-04 01:34:18,845] [main] ---------------------------------------- [testng] [2024-11-04 01:34:18,845] [main] Total files: 259 [testng] [2024-11-04 01:34:18,845] [main] Scan time: 196.722 s (759 ms/file) [testng] [2024-11-04 01:34:18,845] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-11-04 02:16:39,269] [pool-1-thread-1] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] 02:16:39,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:16:39,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:39,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-04_02-16-39.log] [testng] 02:16:39,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3dc4b13f - End of configuration. [testng] [2024-11-04 02:16:47,621] [pool-1-thread-12] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] 02:16:47,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:16:47,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:47,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-04_02-16-47.log] [testng] 02:16:47,623 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33509868 - End of configuration. [testng] [2024-11-04 02:16:49,991] [pool-1-thread-11] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] 02:16:49,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:16:49,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:16:49,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-04_02-16-49.log] [testng] 02:16:49,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74e914f8 - End of configuration. [testng] [2024-11-04 02:17:06,824] [pool-1-thread-10] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] 02:17:06,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:17:06,825 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:06,826 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-04_02-17-06.log] [testng] 02:17:06,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ddccf23 - End of configuration. [testng] [2024-11-04 02:17:07,834] [pool-1-thread-9] Initializing /data/pedro/plv-test.oib: [testng] 02:17:07,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:17:07,834 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:07,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-04_02-17-07.log] [testng] 02:17:07,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f500658 - End of configuration. [testng] [2024-11-04 02:17:09,026] [pool-1-thread-8] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] 02:17:09,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:17:09,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:09,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-04_02-17-09.log] [testng] 02:17:09,027 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ef530f9 - End of configuration. [testng] [2024-11-04 02:17:11,188] [pool-1-thread-7] Initializing /data/molly/11OCT4.OIF: [testng] 02:17:11,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:17:11,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:11,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-04_02-17-11.log] [testng] 02:17:11,190 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e314d56 - End of configuration. [testng] [2024-11-04 02:17:45,843] [pool-1-thread-6] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] 02:17:45,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:17:45,843 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:45,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-04_02-17-45.log] [testng] 02:17:45,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34f0d812 - End of configuration. [testng] [2024-11-04 02:17:47,341] [pool-1-thread-5] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] 02:17:47,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:17:47,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:47,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-04_02-17-47.log] [testng] 02:17:47,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28f5e7bd - End of configuration. [testng] [2024-11-04 02:17:49,283] [pool-1-thread-4] Initializing /data/molly/11OCT5.OIF: [testng] 02:17:49,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:17:49,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:49,284 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-04_02-17-49.log] [testng] 02:17:49,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@531da48e - End of configuration. [testng] [2024-11-04 02:18:26,584] [pool-1-thread-3] Initializing /data/glen/Null file/test no change.oif: [testng] 02:18:26,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:18:26,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:26,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-04_02-18-26.log] [testng] 02:18:26,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18e08648 - End of configuration. [testng] [2024-11-04 02:18:30,562] [pool-1-thread-2] Initializing /data/sten/01.oib: [testng] 02:18:30,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:18:30,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:30,563 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-04_02-18-30.log] [testng] 02:18:30,564 |-INFO in ch.qos.logback.core.sift.SiftProcessor@264e4041 - End of configuration. [testng] [2024-11-04 02:18:50,285] [pool-1-thread-12] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2024-11-04 02:18:50,718] [pool-1-thread-8] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] [2024-11-04 02:18:54,484] [pool-1-thread-9] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2024-11-04 02:19:04,886] [pool-1-thread-2] Initializing /data/glen/seqlinestack.oif: [testng] [2024-11-04 02:19:31,068] [pool-1-thread-6] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2024-11-04 02:19:33,433] [pool-1-thread-10] Initializing /data/johannes/step5b.bmp: [testng] [2024-11-04 02:19:41,636] [pool-1-thread-12] Initializing /data/michael/CELL3.oib: [testng] [2024-11-04 02:19:44,930] [pool-1-thread-10] Initializing /data/brian/Lambda10nm.oib: [testng] [2024-11-04 02:19:58,092] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2024-11-04 02:20:08,415] [pool-1-thread-12] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2024-11-04 02:20:13,940] [pool-1-thread-10] Initializing /data/molly/11OCT3.OIF: [testng] [2024-11-04 02:23:48,226] [pool-1-thread-6] Initializing /data/glen/simulstack.oib: [testng] [2024-11-04 02:23:52,637] [pool-1-thread-12] Initializing /data/molly/11OCT6.OIF: [testng] [2024-11-04 02:24:50,230] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2024-11-04 02:24:53,142] [pool-1-thread-3] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2024-11-04 02:25:07,896] [pool-1-thread-6] Initializing /data/glen/singleseqline.oib: [testng] [2024-11-04 02:25:12,032] [pool-1-thread-3] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2024-11-04 02:25:15,423] [pool-1-thread-8] Initializing /data/monica/Image0056.oif: [testng] [2024-11-04 02:25:18,532] [pool-1-thread-5] Initializing /data/barbara/Image_with_working_import.oib: [testng] [2024-11-04 02:25:30,107] [pool-1-thread-6] Initializing /data/francesco/fGfp.c15.oib: [testng] [2024-11-04 02:25:34,423] [pool-1-thread-5] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] [2024-11-04 02:25:42,575] [pool-1-thread-3] Initializing /data/brian/PA-GFP-3.oib: [testng] [2024-11-04 02:25:52,684] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2024-11-04 02:26:03,502] [pool-1-thread-3] Initializing /data/glen/111407.oif: [testng] [2024-11-04 02:26:24,354] [pool-1-thread-6] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2024-11-04 02:26:51,108] [pool-1-thread-5] Initializing /data/glen/singleseqframe.oif: [testng] [2024-11-04 02:28:32,160] [pool-1-thread-8] Initializing /data/glen/notsaturated.oif: [testng] [2024-11-04 02:30:18,523] [pool-1-thread-5] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2024-11-04 02:30:37,941] [pool-1-thread-5] Initializing /data/brian/CFP-GFP2.oib: [testng] [2024-11-04 02:30:49,335] [pool-1-thread-5] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2024-11-04 02:31:01,044] [pool-1-thread-5] Initializing /data/glen/Image0002.oif: [testng] [2024-11-04 02:58:15,208] [pool-1-thread-9] Initializing /data/glen/singleseqframe.oib: [testng] [2024-11-04 02:58:54,558] [pool-1-thread-9] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2024-11-04 02:59:22,678] [pool-1-thread-9] Initializing /data/johannes/Image0016/Image0016.oif: [testng] [2024-11-04 03:05:09,683] [pool-1-thread-1] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2024-11-04 03:05:29,923] [pool-1-thread-1] Initializing /data/marc/V0606J.oib: [testng] [2024-11-04 03:05:55,916] [pool-1-thread-1] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2024-11-04 03:07:02,068] [pool-1-thread-8] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2024-11-04 03:07:09,085] [pool-1-thread-8] Initializing /data/tom/zseries-test.oib: [testng] [2024-11-04 03:07:42,889] [pool-1-thread-8] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2024-11-04 03:07:53,986] [pool-1-thread-8] Initializing /data/yasunori/series_1.oib: [testng] [2024-11-04 03:08:12,558] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2024-11-04 03:08:43,985] [pool-1-thread-8] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2024-11-04 03:09:19,140] [pool-1-thread-8] Initializing /data/johannes/step2.bmp: [testng] [2024-11-04 03:09:25,700] [pool-1-thread-8] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2024-11-04 03:09:36,671] [pool-1-thread-8] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2024-11-04 03:09:42,380] [pool-1-thread-1] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2024-11-04 03:09:53,473] [pool-1-thread-1] Initializing /data/johannes/Image0006/Image0006.oif: [testng] [2024-11-04 03:15:14,751] [pool-1-thread-9] Initializing /data/aryeh/030408 2 1.oib: [testng] [2024-11-04 03:15:31,832] [pool-1-thread-9] Initializing /data/david/Image0016.oif: [testng] [2024-11-04 03:19:12,979] [pool-1-thread-8] Initializing /data/molly/11OCT2.OIF: [testng] [2024-11-04 03:21:05,392] [pool-1-thread-1] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] [2024-11-04 03:21:13,822] [pool-1-thread-9] Initializing /data/aryeh/1h_after_pdt.oib: [testng] [2024-11-04 03:21:47,778] [pool-1-thread-9] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2024-11-04 03:23:38,583] [pool-1-thread-9] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2024-11-04 03:24:00,637] [pool-1-thread-9] Initializing /data/brian/lambda02nm.oib: [testng] [2024-11-04 03:24:15,751] [pool-1-thread-9] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2024-11-04 03:24:30,592] [pool-1-thread-9] Initializing /data/karl/Image0009.oib: [testng] [2024-11-04 03:24:40,161] [pool-1-thread-9] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] 03:24:54,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:24:54,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:24:54,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-04_03-24-54.log] [testng] 03:24:54,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10180d96 - End of configuration. [testng] [2024-11-04 03:24:57,495] [pool-1-thread-9] Initializing /data/glen/4205basal106072.oif: [testng] [2024-11-04 03:27:17,604] [pool-1-thread-3] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] [2024-11-04 03:27:36,582] [pool-1-thread-3] Initializing /data/glen/seqlinestack.oib: [testng] [2024-11-04 03:27:53,643] [pool-1-thread-3] Initializing /data/glen/singlesimul.oib: [testng] [2024-11-04 03:28:11,023] [pool-1-thread-3] Initializing /data/molly/11OCT9.OIF: [testng] 03:28:12,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:28:12,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:28:12,331 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-04_03-28-12.log] [testng] 03:28:12,332 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60c3120c - End of configuration. [testng] [2024-11-04 03:30:43,487] [pool-1-thread-1] Initializing /data/aryeh/1h.oib: [testng] [2024-11-04 03:31:08,076] [pool-1-thread-1] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2024-11-04 03:31:36,619] [pool-1-thread-1] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2024-11-04 03:32:00,712] [pool-1-thread-1] Initializing /data/glen/notsaturated.oib: [testng] [2024-11-04 03:32:21,617] [pool-1-thread-1] Initializing /data/brian/FLIP.oib: [testng] [2024-11-04 03:32:35,371] [pool-1-thread-1] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2024-11-04 03:32:57,765] [pool-1-thread-1] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2024-11-04 03:33:22,816] [pool-1-thread-1] Initializing /data/simon/never_worked.oib: [testng] [2024-11-04 03:33:48,910] [pool-1-thread-1] Initializing /data/johannes/step1.bmp: [testng] [2024-11-04 03:33:59,474] [pool-1-thread-1] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] [2024-11-04 03:34:21,988] [pool-1-thread-1] Initializing /data/kay/IM2pg.oib: [testng] [2024-11-04 03:34:48,817] [pool-1-thread-1] Initializing /data/stefan/cytosol_03e.oib: [testng] [2024-11-04 03:35:14,849] [pool-1-thread-1] Initializing /data/molly/11OCT8.OIF: [testng] [2024-11-04 03:40:58,489] [pool-1-thread-7] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2024-11-04 03:41:21,483] [pool-1-thread-7] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2024-11-04 03:41:48,050] [pool-1-thread-7] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2024-11-04 03:42:14,213] [pool-1-thread-4] Initializing /data/qa-17748/Image0079.oib: [testng] [2024-11-04 03:42:19,523] [pool-1-thread-7] Initializing /data/glen/singleseqline.oif: [testng] [2024-11-04 03:42:40,388] [pool-1-thread-4] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] [2024-11-04 03:43:10,085] [pool-1-thread-4] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2024-11-04 03:43:33,174] [pool-1-thread-4] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2024-11-04 03:43:49,913] [pool-1-thread-4] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2024-11-04 03:44:14,010] [pool-1-thread-4] Initializing /data/yoshihito/XY.oif: [testng] [2024-11-04 03:45:32,404] [pool-1-thread-5] Initializing /data/stefan/cytosol_01a.oif: [testng] 03:51:04,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:51:04,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:51:04,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-04_03-51-04.log] [testng] 03:51:04,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f00ecb9 - End of configuration. [testng] [2024-11-04 03:51:24,001] [pool-1-thread-4] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2024-11-04 03:51:28,069] [pool-1-thread-7] Initializing /data/david/Image0016.oib: [testng] [2024-11-04 03:51:45,077] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2024-11-04 03:51:52,328] [pool-1-thread-7] Initializing /data/molly/11OCT7.OIF: [testng] [2024-11-04 03:53:29,117] [pool-1-thread-4] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2024-11-04 03:53:54,375] [pool-1-thread-4] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2024-11-04 03:55:33,621] [pool-1-thread-6] Initializing /data/allan/62909#1.oib: [testng] [2024-11-04 03:55:53,324] [pool-1-thread-6] Initializing /data/molly/11OCT11.OIF: [testng] [2024-11-04 04:03:49,449] [pool-1-thread-12] Initializing /data/glen/simulstack.oif: [testng] [2024-11-04 04:09:24,996] [pool-1-thread-2] Initializing /data/brian/LILY POLLEN.oib: [testng] [2024-11-04 04:09:58,447] [pool-1-thread-2] Initializing /data/molly/11OCT10.OIF: [testng] [2024-11-04 04:22:26,968] [pool-1-thread-11] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2024-11-04 04:22:58,096] [pool-1-thread-11] Initializing /data/christian/20min.oif: [testng] [2024-11-04 04:25:06,870] [pool-1-thread-11] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2024-11-04 04:25:37,383] [pool-1-thread-11] Initializing /data/aryeh/control_test.oib: [testng] [2024-11-04 04:26:21,528] [pool-1-thread-11] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] [2024-11-04 04:34:42,448] [pool-1-thread-11] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2024-11-04 04:54:02,645] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2024-11-04 04:54:22,978] [pool-1-thread-4] Initializing /data/qa-17748/Image0098.oib: [testng] [2024-11-04 04:54:39,788] [pool-1-thread-4] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2024-11-04 04:55:00,629] [pool-1-thread-4] Initializing /data/tom/RGB-1.avi: [testng] [2024-11-04 04:55:12,513] [pool-1-thread-4] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] 04:55:20,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:55:20,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:55:20,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-04_04-55-20.log] [testng] 04:55:20,942 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7319aba - End of configuration. [testng] [2024-11-04 04:55:37,823] [pool-1-thread-4] Initializing /data/brian/Kaede15.oib: [testng] [2024-11-04 04:55:56,909] [pool-1-thread-4] Initializing /data/stefan/cytosol_08b.oif: [testng] 05:15:14,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:15:14,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:15:14,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-04_05-15-14.log] [testng] 05:15:14,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12c81d67 - End of configuration. [testng] [2024-11-04 05:16:00,433] [pool-1-thread-12] Initializing /data/glen/Null file/test change.oif: [testng] [2024-11-04 05:18:46,330] [pool-1-thread-12] Initializing /data/yoshihito/XY.oib: [testng] [2024-11-04 05:19:05,566] [pool-1-thread-12] Initializing /data/glen/LUT issue/60x11.oif: [testng] [2024-11-04 05:19:55,840] [pool-1-thread-1] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2024-11-04 05:20:17,563] [pool-1-thread-1] Initializing /data/johannes/step4.bmp: [testng] [2024-11-04 05:20:27,546] [pool-1-thread-1] Initializing /data/johannes/step4b.bmp: [testng] [2024-11-04 05:20:36,793] [pool-1-thread-1] Initializing /data/simon/used_to_work.oib: [testng] [2024-11-04 05:20:55,794] [pool-1-thread-1] Initializing /data/johannes/step3.bmp: [testng] [2024-11-04 05:21:03,255] [pool-1-thread-1] Initializing /data/chris/missegragation-15.oib: [testng] [2024-11-04 05:21:22,686] [pool-1-thread-1] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2024-11-04 05:21:53,650] [pool-1-thread-1] Initializing /data/stefan/yc2_live-03.oib: [testng] [2024-11-04 05:22:20,648] [pool-1-thread-1] Initializing /data/brian/MitoRed-POPO3.oib: [testng] [2024-11-04 05:22:42,633] [pool-1-thread-1] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] [2024-11-04 05:25:31,075] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2024-11-04 05:25:50,252] [pool-1-thread-9] Initializing /data/jae/Image0001.oib: [testng] [2024-11-04 05:26:09,760] [pool-1-thread-7] Initializing /data/glen/singlesimul.oif: [testng] [2024-11-04 05:26:15,250] [pool-1-thread-9] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2024-11-04 05:29:48,041] [pool-1-thread-7] Initializing /data/marc/V0606L.oib: [testng] [2024-11-04 05:30:26,323] [pool-1-thread-7] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2024-11-04 05:30:46,494] [pool-1-thread-7] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] 05:35:47,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:35:47,529 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:35:47,531 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-04_05-35-47.log] [testng] 05:35:47,531 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12910519 - End of configuration. [testng] 05:48:41,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:48:41,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:48:41,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-04_05-48-41.log] [testng] 05:48:41,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e40422d - End of configuration. [testng] 06:02:00,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:02:00,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:02:00,069 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-04_06-02-00.log] [testng] 06:02:00,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1684e165 - End of configuration. [testng] 06:03:28,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:03:28,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:03:28,312 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-04_06-03-28.log] [testng] 06:03:28,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18a0a183 - End of configuration. [testng] 08:03:33,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:03:33,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:03:33,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-04_08-03-33.log] [testng] 08:03:33,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c5af57e - End of configuration. [testng] 09:44:12,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:44:12,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:44:12,212 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-04_09-44-12.log] [testng] 09:44:12,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ef235d8 - End of configuration. [testng] 10:00:46,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:00:46,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:00:46,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-04_10-00-46.log] [testng] 10:00:46,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dd5a794 - End of configuration. [testng] 10:20:41,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:20:41,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:20:41,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-04_10-20-41.log] [testng] 10:20:41,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3212ff1b - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 529 minutes 44 seconds Finished: SUCCESS